Factsheet for TraesCS7B01G399800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, unclear, golgi, plastid

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, plastid, unclear
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 22160430
golgi: 25769308
unclear: 25769308

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G318200.1	Wheat	cytosol	93.64	91.96
Os05t0490100-01	Rice	cytosol, nucleus	91.82	90.18
EES18421	Sorghum	cytosol	90.91	89.29
VIT_13s0064g00850.t01	Wine grape	cytosol	82.73	81.25
TraesCS3B01G217500.1	Wheat	cytosol	82.73	80.53
GSMUA_AchrUn_...	Banana	cytosol	79.09	77.68
GSMUA_Achr8P09330_001	Banana	cytosol	78.18	76.79
TraesCS7D01G480000.2	Wheat	mitochondrion	79.09	73.73
Zm00001d038535_P001	Maize	cytosol	85.45	66.2
GSMUA_Achr11P...	Banana	plastid	76.36	57.93
TraesCS4B01G163300.1	Wheat	plasma membrane	36.36	51.95

Protein Annotations

MapMan:17.1.2.1.31	Gene3D:3.30.1330.30	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR029064	InterPro:L30e-like
HAMAP:MF_00481	PFAM:PF01248	ScanProsite:PS00709	ScanProsite:PS00993	PANTHER:PTHR11449	PANTHER:PTHR11449:SF6
InterPro:Ribosomal_L30e	InterPro:Ribosomal_L30e_CS	InterPro:Ribosomal_L7Ae/L30e/S12e/Gad45	SUPFAM:SSF55315	EnsemblPlantsGene:TraesCS7B01G399800	EnsemblPlants:TraesCS7B01G399800.1

Description

No Description!

Coordinates

chr7B:+:666503081..666504884

Molecular Weight (calculated)

12235.1 Da

IEP (calculated)

10.074

GRAVY (calculated)

-0.304

Length

110 amino acids

Sequence
(BLAST)

001: MAPTKKSKKS TENINNKLQL VMKSGKYTLG YKTVLKTLRS SKGKLIILAN NCPPLRKSEI EYYAMLSKIS VHHFHGNNVD LGTACGKYYR VCCLSILDPG
101: DSDIITTVPQ

Best Arabidopsis Sequence Match ( AT3G18740.1 )
(BLAST)

001: MVAEKKAKKS HEGINSRLAL VMKSGKYTLG YKSVLKSLRS SKGKLILISS NCPPLRRSEI EYYAMLAKVG VHRYNGNNVD LGTACGKYFR VSCLSIVDPG
101: DSDIIKTLPG DQ

Arabidopsis Description

RPL30C60S ribosomal protein L30-3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSA3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.