CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16408	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06970.1	KRH16408	AT2G18960.1	24163289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13315	Soybean	cytosol, endoplasmic reticulum, nucleus	97.55	97.37
KRH13324	Soybean	cytosol	11.07	93.13
VIT_13s0084g00630.t01	Wine grape	cytosol	76.59	74.96
AT5G06970.1	Thale cress	cytosol	71.42	71.48
CDX69997	Canola	cytosol, peroxisome, plastid	69.69	71.18
Bra009303.1-P	Field mustard	cytosol, peroxisome, plastid	69.42	71.03
CDX99020	Canola	cytosol, peroxisome, plastid	69.51	70.47
Solyc01g096540.2.1	Tomato	cytosol, plastid	70.78	70.27
Os03t0683700-02	Rice	plasma membrane	15.7	66.54
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	19.15	65.73
TraesCS2D01G215400.1	Wheat	nucleus	65.61	65.31
KXG21868	Sorghum	cytosol	65.52	65.28
TraesCS1A01G052200.3	Wheat	cytosol, mitochondrion, nucleus	64.79	64.56
HORVU2Hr1G041780.2	Barley	cytosol	31.49	64.5
GSMUA_Achr2P01140_001	Banana	cytosol	47.64	64.5
TraesCS1B01G069300.2	Wheat	nucleus	64.79	63.47
HORVU2Hr1G041800.16	Barley	cytosol	24.68	62.82
Zm00001d037867_P001	Maize	cytosol	65.06	61.33
PGSC0003DMT400004282	Potato	extracellular	10.44	44.23
Solyc02g071830.1.1	Tomato	endoplasmic reticulum, extracellular	11.62	35.65
KRH62072	Soybean	cytosol, mitochondrion, nucleus	13.34	31.89
KRH52752	Soybean	nucleus	27.5	30.12
KRH62073	Soybean	cytosol, peroxisome	14.34	30.1
KRH74278	Soybean	cytosol	25.68	29.54
KRH07260	Soybean	cytosol	25.32	29.34
KRH60225	Soybean	cytosol	9.53	28.0
KRG90363	Soybean	nucleus	25.5	27.63
KRH33633	Soybean	nucleus	25.23	27.34
KRG92279	Soybean	cytosol	24.5	26.68
KRH60226	Soybean	cytosol	13.7	26.54
KRH34531	Soybean	cytosol	24.23	26.23
KRH41514	Soybean	cytosol	18.42	25.76
KRH70255	Soybean	plastid	23.68	23.95
KRH08629	Soybean	cytosol	23.41	23.54

Protein Annotations

EMBL:ACUP02008289	EnsemblPlants:KRH20669	EnsemblPlantsGene:GLYMA_13G192900	EntrezGene:100813299	InterPro:DUF810	InterPro:IPR014770
InterPro:IPR014772	InterPro:Munc13_1	InterPro:Munc13_dom-2	PANTHER:PTHR31280	PANTHER:PTHR31280:SF2	PFAM:PF05664
PFscan:PS51258	PFscan:PS51259	ProteinID:KRH20669	ProteinID:KRH20669.1	SEG:seg	UniParc:UPI00023CEEB6
UniProt:I1M0N4	MapMan:21.1.1.3.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:30622498..30639220

Molecular Weight (calculated)

124230.0 Da

IEP (calculated)

5.836

GRAVY (calculated)

-0.245

Length

1102 amino acids

Sequence
(BLAST)

0001: MEEENAIELL QRYRRDRRVL LDFILSGSLI KKVVMPPGAV TLDDVDLDQV SVDYVLNCAK KSTLLELSEA IRDYHDHTGL PQMSDTGSVG EFYLVTDPGS
0101: SGSPPRRPPP TVPTAVPPVA VSTPPVFPPS PIVSNVSRSE SFDSTQEKEL TVDDIEDFED DDDVAVVEGF RAKRTLNDAS DLAVKLPSFS TGISDDDLRE
0201: TAYEILLACA GATGGLIVPS KEKKKDKKSS LIRKLGRSKS GSVVSQSQNA PGLVGLLETM RVQMEISESM DIRTRQGLLN ALVGKVGKRM DTLLIPLELL
0301: CCISRSEFSD KKAFIRWQKR QLKVLEEGLV NHPAVGFGES GRKTNELRIL LAKIEEAEFL PSSTGELQRT ECLRSLREIA IPLAERPARG DLTGEICHWA
0401: DGYHLNVRLY EKLLLSVFDM LDEGKLTEEV EEILELLKST WRVLGITETI HQTCYAWVLF RQYVITREHG VLLHALEQLN KIPLMEQRGQ QERLHLKSLH
0501: SKVEGERDMS FLQSFLTPIQ RWTDKQLGDY HLHFNEGSAT MEKIVAVAMI TRRLLLEEPE TSTQSLPISD RDQIEIYISS SIKNAFSRTV QVVDRVDMSH
0601: EHPLALLAEE LKKFLKKESA SFLPILSQRH PQATVVSASL VHKLYGHRLK PFLDSAEHLS EDVISVFPAA ESLEQFIMAL ITSVCHEENA EILLKKLNLY
0701: QIEMKSGTLV LRWVNSQLGR ILGWVERVIQ QEHWDPISPQ QRHAGSIVEV YRIVEETVDQ FFGLKVPMRF TELNSLFRGI DNALQVYANN VVNELASKEE
0801: LIPPVPILTR YKKEAGIKAF VKKELFDARV PEPDETRPSQ ISVLATPTLC VQLNTLYYAI SHLNKLEDNI WERWTSKRSQ EKLIKKSFDD KSKSFSQKDT
0901: FEGSRKVINA AMDRICEYTG TKIVFCDLRV PFMDNLYKPS VSGCRLDALI EPLDMELSQL CDIVVEPLRD RIVTSLLQAS LDGLLRVILD GGPSRVFFTG
1001: DAKLLEEDLE VLKEFFISGG DGLPRGVVEN QVARVRHVIK LHGYETRELI EDLKSASGME MQGSKSKLGT DSKTLLRILC HRSDSEASQF LKKQYKIPSS
1101: SA

Best Arabidopsis Sequence Match ( AT5G06970.1 )
(BLAST)

0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G

Arabidopsis Description

PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.