Factsheet for Solyc02g071830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

plastid 3
extracellular 5
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	mitochondrion, nucleus, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g011700.1.1	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06970.1	Solyc02g011700.1.1	AT2G18960.1	24163289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400004282	Potato	extracellular	22.56	31.15
Solyc01g096540.2.1	Tomato	cytosol, plastid	44.01	14.23
GSMUA_Achr2P01140_001	Banana	cytosol	30.92	13.64
HORVU2Hr1G041780.2	Barley	cytosol	19.22	12.83
AT5G06970.1	Thale cress	cytosol	36.49	11.9
CDX69997	Canola	cytosol, peroxisome, plastid	35.38	11.77
Bra009303.1-P	Field mustard	cytosol, peroxisome, plastid	35.1	11.7
CDX99020	Canola	cytosol, peroxisome, plastid	35.38	11.68
VIT_13s0084g00630.t01	Wine grape	cytosol	36.49	11.63
KRH20669	Soybean	endoplasmic reticulum	35.65	11.62
KRH13315	Soybean	cytosol, endoplasmic reticulum, nucleus	35.38	11.5
KXG21868	Sorghum	cytosol	33.98	11.03
TraesCS1A01G052200.3	Wheat	cytosol, mitochondrion, nucleus	32.87	10.67
TraesCS2D01G215400.1	Wheat	nucleus	32.87	10.66
TraesCS1B01G069300.2	Wheat	nucleus	32.87	10.49
Zm00001d037867_P001	Maize	cytosol	33.7	10.35
Solyc08g080520.2.1	Tomato	cytosol	19.5	6.14
Solyc05g018180.2.1	Tomato	cytosol, nucleus	13.37	5.03
Solyc08g066600.2.1	Tomato	cytosol, mitochondrion, plastid	12.81	4.61
Solyc09g090480.2.1	Tomato	cytosol	11.42	4.02
Solyc03g005630.2.1	Tomato	cytosol	10.86	3.81
Solyc05g041240.1.1	Tomato	endoplasmic reticulum, golgi	2.23	2.47
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	0.0	0.0
Os03t0683700-02	Rice	plasma membrane	0.0	0.0
KRH13324	Soybean	cytosol	0.0	0.0
HORVU2Hr1G041800.16	Barley	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc02g071830.1.1	EnsemblPlantsGene:Solyc02g071830.1	InterPro:DUF810	PANTHER:PTHR31280	PANTHER:PTHR31280:SF2	PFAM:PF05664
SEG:seg	SignalP:SignalP-noTM	UniParc:UPI0002769019	UniProt:K4B8F8	MapMan:35.1	:

Description

No Description!

Coordinates

chr2:-:41197801..41202694

Molecular Weight (calculated)

40704.4 Da

IEP (calculated)

6.826

GRAVY (calculated)

-0.036

Length

359 amino acids

Sequence
(BLAST)

001: MFIFILDGFL LVLKVMKIAC PYFHITNFAN TLNVRINCYC PFEELSSLSK SQYLSSTQQQ ELTVEYIEDF DDDDDLDELD SQRFSRRVPM LLVILCLDCR
101: YLLLIPLSSF KMYSFLAFTW MDGRYLYFRL YFFLAIGDDH LRETAYEFLL DAAGPSGLIV PSKEIKKEKT SRLMTKLGCS KSDNAMTQSQ HLSVLVSLLE
201: TMRVQMEIPG GHGRQDMTCS VKHVGGGAYK SFCYRVGEAG IKAHERRVPL AKIEESELQL RVWGAKDLKA VGAHALTYTA SPTVHYLLSC ELSVPGPSGG
301: FMFEKRCKGQ CLKSLREIAV PLAERPAGGD LTGEVCHRAD NYHRNVKLYE NLLLNVFDV

Best Arabidopsis Sequence Match ( AT5G06970.1 )
(BLAST)

0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G

Arabidopsis Description

PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.