Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G502400.1 | plasma membrane |
| TraesCS2B01G530500.1 | plasma membrane |
| TraesCS2D01G503000.1 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06970.1 | TraesCS2A01G502400.1 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | TraesCS2B01G530500.1 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | TraesCS2D01G503000.1 | AT2G18960.1 | 24163289 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G041800.16 | Barley | cytosol | 38.61 | 98.61 |
| TraesCS2D01G215400.1 | Wheat | nucleus | 98.46 | 98.37 |
| TraesCS1B01G069300.2 | Wheat | nucleus | 99.01 | 97.33 |
| HORVU2Hr1G041780.2 | Barley | cytosol | 46.11 | 94.8 |
| Os03t0683700-02 | Rice | plasma membrane | 20.89 | 88.85 |
| KXG21868 | Sorghum | cytosol | 87.61 | 87.61 |
| Zm00001d037867_P001 | Maize | cytosol | 86.53 | 81.86 |
| GSMUA_Achr2P01140_001 | Banana | cytosol | 51.63 | 70.15 |
| KRH13324 | Soybean | cytosol | 8.05 | 67.94 |
| VIT_13s0084g00630.t01 | Wine grape | cytosol | 66.91 | 65.72 |
| KRH20669 | Soybean | endoplasmic reticulum | 64.56 | 64.79 |
| KRH13315 | Soybean | cytosol, endoplasmic reticulum, nucleus | 64.65 | 64.76 |
| Solyc01g096540.2.1 | Tomato | cytosol, plastid | 64.83 | 64.59 |
| AT5G06970.1 | Thale cress | cytosol | 63.47 | 63.76 |
| Bra009303.1-P | Field mustard | cytosol, peroxisome, plastid | 61.75 | 63.42 |
| CDX69997 | Canola | cytosol, peroxisome, plastid | 61.75 | 63.3 |
| CDX99020 | Canola | cytosol, peroxisome, plastid | 61.84 | 62.93 |
| PGSC0003DMT400004282 | Potato | extracellular | 9.67 | 41.15 |
| Solyc02g071830.1.1 | Tomato | endoplasmic reticulum, extracellular | 10.67 | 32.87 |
| TraesCS2A01G401500.1 | Wheat | cytosol | 31.37 | 30.55 |
| TraesCS5A01G187000.1 | Wheat | mitochondrion, plastid | 24.95 | 28.19 |
| TraesCS1A01G150700.1 | Wheat | cytosol | 24.68 | 27.55 |
| TraesCS5A01G507900.1 | Wheat | mitochondrion | 24.68 | 26.5 |
| TraesCS4A01G104100.2 | Wheat | cytosol | 23.51 | 25.95 |
Protein Annotations
| MapMan:21.1.1.3.2 | InterPro:DUF810 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010118 | GO:GO:0016020 |
| InterPro:IPR014770 | InterPro:IPR014772 | InterPro:Munc13_1 | InterPro:Munc13_dom-2 | PFAM:PF05664 | PFscan:PS51258 |
| PFscan:PS51259 | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF2 | EnsemblPlantsGene:TraesCS1A01G052200 | EnsemblPlants:TraesCS1A01G052200.3 | SEG:seg |
Description
No Description!
Coordinates
chr1A:+:34162211..34173663
Molecular Weight (calculated)
125056.0 Da
IEP (calculated)
5.778
GRAVY (calculated)
-0.313
Length
1106 amino acids
Sequence
(BLAST)
(BLAST)
0001: LTRENPVELL QRYRRDRHVL LNYILSGNLI KKVVMPPGAI SLDDVDIDQV SVDYVLNCAK KGDPLDLGDA IRLYHDSLDY PYVDNTGDVE GFYLLTRPEY
0101: SGSAPTREPP PVPATAPLPV VVPPPVVEQP QIAVPSSVAN LPKSLSLDSP TEELTIDDIE DFEDDEGEFD SRRASRRHQT DANDISLRLP LFETGITDDD
0201: LRETAYEILV AAAGASGGLI VPKKEKKKEK RHRLMRKLGR SKSESAESQT HRQPGLVGLL EILRAQLEIT ESMDIRTRQG LLNAMVGKVG KRMDNLLIPL
0301: ELLCCISRAE FSDMKAYLRW QKRQLNMLEE GLINHPVVGF GELGRKVNEL RNLFRKIEES ESLSPSAAEV QRTECLRSLR EVATSFSERP ARGDLTGEVC
0401: HWADGYHLNA ALYEKMLGSV FDTLDEGKLT EEVEEILELL KSTWRILGIT ETIHDTCYAW VLFRQFVFTG EQGLLKVVIE HLRKIPLKEQ RGPQERLHLK
0501: SLRSSVDADD SCQDFTFFQS FLSPVQKWVD KKLNDYHLHF SEGPSMMVDI VTVAMLTRRI LGEENDKAME SPDRDQIDRY ITSSVKSAFM KIAHFVEIKA
0601: DTSHEHVLAS LAEETKKLLK IETNIFSPVL SRWHPQAAVL SASLLHKLYG NKLGPFLEHS EHLTEDVVSV FPAADSLEQY IMSVMASVVG DDGLDSLCRQ
0701: KLVPYEIESK SGTVVLRWVN GQLERVETWV KRAAEQETWD PISPQQRHGG SIVEVYRIIE ETADQFFAFK VPMRIGELNS FCRGIDKAFQ IYTQLVTQPI
0801: VDKEDLVPPV PVLTRYKKEL GIKAFVKKEI QEVRPVDERK SSEIVQLTMS KLCVRLNSLY YAISQLGKLE DSISERWAKR QSDKINIRRS MNGKSKGVVS
0901: NQKNQFDGSR KEINAAIDRV CEFTGLKVIF WDLQQPFIDN MYKNNVLQAR LDTIVEVLDL VLAQLCDVIV EQLRDRVVTG LLQASLDGLV RVILDGGPTR
1001: VFSPNDAPLL EEDLEILKEF FISGGDGLPR GTVENLVSRV RPVINLIKQE TRVLIDDLRE VTQGGKSKFG SDSKTLLRVL CHRNDSEASH YVKKHFKIPS
1101: SAPPST
0101: SGSAPTREPP PVPATAPLPV VVPPPVVEQP QIAVPSSVAN LPKSLSLDSP TEELTIDDIE DFEDDEGEFD SRRASRRHQT DANDISLRLP LFETGITDDD
0201: LRETAYEILV AAAGASGGLI VPKKEKKKEK RHRLMRKLGR SKSESAESQT HRQPGLVGLL EILRAQLEIT ESMDIRTRQG LLNAMVGKVG KRMDNLLIPL
0301: ELLCCISRAE FSDMKAYLRW QKRQLNMLEE GLINHPVVGF GELGRKVNEL RNLFRKIEES ESLSPSAAEV QRTECLRSLR EVATSFSERP ARGDLTGEVC
0401: HWADGYHLNA ALYEKMLGSV FDTLDEGKLT EEVEEILELL KSTWRILGIT ETIHDTCYAW VLFRQFVFTG EQGLLKVVIE HLRKIPLKEQ RGPQERLHLK
0501: SLRSSVDADD SCQDFTFFQS FLSPVQKWVD KKLNDYHLHF SEGPSMMVDI VTVAMLTRRI LGEENDKAME SPDRDQIDRY ITSSVKSAFM KIAHFVEIKA
0601: DTSHEHVLAS LAEETKKLLK IETNIFSPVL SRWHPQAAVL SASLLHKLYG NKLGPFLEHS EHLTEDVVSV FPAADSLEQY IMSVMASVVG DDGLDSLCRQ
0701: KLVPYEIESK SGTVVLRWVN GQLERVETWV KRAAEQETWD PISPQQRHGG SIVEVYRIIE ETADQFFAFK VPMRIGELNS FCRGIDKAFQ IYTQLVTQPI
0801: VDKEDLVPPV PVLTRYKKEL GIKAFVKKEI QEVRPVDERK SSEIVQLTMS KLCVRLNSLY YAISQLGKLE DSISERWAKR QSDKINIRRS MNGKSKGVVS
0901: NQKNQFDGSR KEINAAIDRV CEFTGLKVIF WDLQQPFIDN MYKNNVLQAR LDTIVEVLDL VLAQLCDVIV EQLRDRVVTG LLQASLDGLV RVILDGGPTR
1001: VFSPNDAPLL EEDLEILKEF FISGGDGLPR GTVENLVSRV RPVINLIKQE TRVLIDDLRE VTQGGKSKFG SDSKTLLRVL CHRNDSEASH YVKKHFKIPS
1101: SAPPST
0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
Arabidopsis Description
PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.