CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 1
endoplasmic reticulum 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16408	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06970.1	KRH16408	AT2G18960.1	24163289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20669	Soybean	endoplasmic reticulum	97.37	97.55
KRH13324	Soybean	cytosol	11.14	93.89
VIT_13s0084g00630.t01	Wine grape	cytosol	76.27	74.78
AT5G06970.1	Thale cress	cytosol	71.38	71.57
CDX69997	Canola	cytosol, peroxisome, plastid	69.75	71.36
Bra009303.1-P	Field mustard	cytosol, peroxisome, plastid	69.47	71.22
CDX99020	Canola	cytosol, peroxisome, plastid	69.57	70.65
Solyc01g096540.2.1	Tomato	cytosol, plastid	70.56	70.18
Os03t0683700-02	Rice	plasma membrane	15.58	66.15
KXG21868	Sorghum	cytosol	65.67	65.55
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	19.02	65.42
TraesCS2D01G215400.1	Wheat	nucleus	65.58	65.4
HORVU2Hr1G041780.2	Barley	cytosol	31.61	64.87
TraesCS1A01G052200.3	Wheat	cytosol, mitochondrion, nucleus	64.76	64.65
GSMUA_Achr2P01140_001	Banana	cytosol	47.37	64.25
TraesCS1B01G069300.2	Wheat	nucleus	64.86	63.64
HORVU2Hr1G041800.16	Barley	cytosol	24.73	63.05
Zm00001d037867_P001	Maize	cytosol	65.4	61.76
PGSC0003DMT400004282	Potato	extracellular	10.24	43.46
Solyc02g071830.1.1	Tomato	endoplasmic reticulum, extracellular	11.5	35.38
KRH62072	Soybean	cytosol, mitochondrion, nucleus	13.22	31.67
KRH52752	Soybean	nucleus	27.26	29.92
KRH62073	Soybean	cytosol, peroxisome	14.22	29.9
KRH74278	Soybean	cytosol	25.54	29.44
KRH07260	Soybean	cytosol	25.18	29.23
KRH60225	Soybean	cytosol	9.51	28.0
KRG90363	Soybean	nucleus	25.45	27.63
KRH33633	Soybean	nucleus	25.18	27.34
KRG92279	Soybean	cytosol	24.64	26.88
KRH34531	Soybean	cytosol	24.37	26.42
KRH60226	Soybean	cytosol	13.59	26.36
KRH41514	Soybean	cytosol	18.3	25.63
KRH70255	Soybean	plastid	23.55	23.85
KRH08629	Soybean	cytosol	23.19	23.36

Protein Annotations

EntrezGene:100780877	MapMan:21.1.1.3.2	EMBL:ACUP02009689	InterPro:DUF810	EnsemblPlantsGene:GLYMA_15G230600	GO:GO:0003674
GO:GO:0005488	GO:GO:0005509	GO:GO:0005544	GO:GO:0008289	UniProt:I1MIM3	InterPro:IPR014770
InterPro:IPR014772	EnsemblPlants:KRH13315	ProteinID:KRH13315	ProteinID:KRH13315.1	ProteinID:KRH13316.1	InterPro:Munc13_1
InterPro:Munc13_dom-2	PFAM:PF05664	PFscan:PS51258	PFscan:PS51259	PANTHER:PTHR31280	PANTHER:PTHR31280:SF2
UniParc:UPI00023D7E70	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:+:43189271..43206880

Molecular Weight (calculated)

124470.0 Da

IEP (calculated)

5.716

GRAVY (calculated)

-0.259

Length

1104 amino acids

Sequence
(BLAST)

0001: MEEENAIELL QRYRRDRRVL LDFILSGSLI KKVVMPPGAV TLDDVDLDQV SVDYVLNCAK KSTLLELSEA IRDYHDHTGL PQMSDTGSVG EFYLVTDPES
0101: SGSPPRRPPP TVPIPAVPPV AVSTPPPVFP PSPIVSNVSR SESFDSTQEK ELTVDDIEDF EDDDDVAVVE GFRAKRTLND ASDLAVKLPS FSTGISDDDL
0201: RETAYEIILG CAGATGGLIV PSKEKKKDKK SSLIRKLGRS KSGSVVSQSQ NAPGLVGLLE TMRVQMEISE SMDIRTRQGL LNALVGKVGK RMDTLLIPLE
0301: LLCCISRSEF SDKKAFIRWQ KRQLKVLEEG LVNHPAVGFG ESGRKTNELR ILLAKIEEAE FLPSSTGELQ RTECLRSLRE IAIPLAERPA RGDLTGEICH
0401: WADGYHLNVR LYEKLLLSVF DMLDEGKLTE EVEEILELLK STWRVLGITE TIHHTCYAWV LFRQYVITRE HRVLLHALEQ LNKIPLMEQR GQQERLHLKS
0501: LRSKVEGERD MSFLQSFLTP IQRWTDKQLG DYHLHFNEGS ATMEKIVAVA MITRRLLLEE PETTTQSLPI SDRDQIEIYI SSSIKNAFSR MVQVVERVDM
0601: SNEHPLALLA EELKKLLKKD SATFLPVLSQ RHPQATVASA SLVHKLYGHR LKPFLDSAEH LSEDVISVFP AAESLEQFIM ALITSVCHEE NAEILLKKLN
0701: PYQIETKSGT LVLRWVNSQL GRILGWVERV IQQEHWDPIS PQQRHAGSIV EVYRIVEETV DQFFGLKVPM RFTELNSLFR GIDNALQVYA NNVVNDLASK
0801: EELIPPVPIL TRYKKEAGLK AFVKKELFDA RVPEPDETRP SQISVLATPT LCVQLNTLYY AINHLNKLED NIWERWTSKR SQEKLIKKSL DDKSKSFSQK
0901: DTFEGSRKVI NAAMDRICEY TGTKIVFCDL RVPFMDNLYK PSVSGCRLDA LIEPLDMELS QLCDIVVEPL RDRIVTSLLQ ASLDGLLRVI LDGGPSRVFF
1001: PGDVKLLEED LEVLKEFFIS GGDGLPRGVV ENQVARVRNV INLHGYETRE LIEDLKSASG MEMQGGKSKL GTDSKTLLRI LCHRSDSEAS QFLKKQYKIP
1101: SSSA

Best Arabidopsis Sequence Match ( AT5G06970.1 )
(BLAST)

0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G

Arabidopsis Description

PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.