Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- peroxisome 1
- plastid 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra024452.1-P | plasma membrane |
| Bra038835.1-P | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06970.1 | Bra024452.1-P | AT2G18960.1 | 24163289 |
| AT5G06970.1 | Bra038835.1-P | AT2G18960.1 | 24163289 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69997 | Canola | cytosol, peroxisome, plastid | 99.91 | 99.72 |
| AT5G06970.1 | Thale cress | cytosol | 93.22 | 91.19 |
| KRH13324 | Soybean | cytosol | 9.1 | 74.81 |
| KRH13315 | Soybean | cytosol, endoplasmic reticulum, nucleus | 71.22 | 69.47 |
| KRH20669 | Soybean | endoplasmic reticulum | 71.03 | 69.42 |
| VIT_13s0084g00630.t01 | Wine grape | cytosol | 71.12 | 68.03 |
| GSMUA_Achr2P01130_001 | Banana | extracellular, golgi | 20.06 | 67.29 |
| Solyc01g096540.2.1 | Tomato | cytosol, plastid | 69.17 | 67.12 |
| Os03t0683700-02 | Rice | plasma membrane | 15.51 | 64.23 |
| HORVU2Hr1G041780.2 | Barley | cytosol | 31.94 | 63.94 |
| GSMUA_Achr2P01140_001 | Banana | cytosol | 47.73 | 63.15 |
| KXG21868 | Sorghum | cytosol | 64.62 | 62.93 |
| HORVU2Hr1G041800.16 | Barley | cytosol | 25.16 | 62.59 |
| TraesCS2D01G215400.1 | Wheat | nucleus | 63.6 | 61.88 |
| TraesCS1A01G052200.3 | Wheat | cytosol, mitochondrion, nucleus | 63.42 | 61.75 |
| TraesCS1B01G069300.2 | Wheat | nucleus | 63.14 | 60.44 |
| Zm00001d037867_P001 | Maize | cytosol | 64.35 | 59.28 |
| PGSC0003DMT400004282 | Potato | extracellular | 10.21 | 42.31 |
| Solyc02g071830.1.1 | Tomato | endoplasmic reticulum, extracellular | 11.7 | 35.1 |
| Bra040967.1-P | Field mustard | cytosol | 33.05 | 31.81 |
| Bra039035.1-P | Field mustard | cytosol | 25.81 | 29.2 |
| Bra034270.1-P | Field mustard | cytosol | 25.72 | 27.9 |
| Bra032507.1-P | Field mustard | mitochondrion, plastid | 23.12 | 26.95 |
| Bra015318.1-P | Field mustard | cytosol | 25.44 | 26.42 |
| Bra022939.1-P | Field mustard | cytosol | 24.79 | 25.77 |
| Bra021851.1-P | Field mustard | cytosol | 24.7 | 25.68 |
Protein Annotations
| MapMan:21.1.1.3.2 | EnsemblPlantsGene:Bra009303 | EnsemblPlants:Bra009303.1 | EnsemblPlants:Bra009303.1-P | InterPro:DUF810 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009506 |
| GO:GO:0009987 | GO:GO:0010118 | GO:GO:0016020 | InterPro:IPR014770 | InterPro:IPR014772 | UniProt:M4CYK6 |
| InterPro:Munc13_1 | InterPro:Munc13_dom-2 | PFAM:PF05664 | PFscan:PS51258 | PFscan:PS51259 | PANTHER:PTHR31280 |
| PANTHER:PTHR31280:SF2 | UniParc:UPI0002543989 | SEG:seg | : | : | : |
Description
AT5G06970 (E=0.0) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Munc13 homology 1 (InterPro:IPR014770), Protein of unknown function DUF810 (InterPro:IPR008528), Munc13 homology 2 (InterPro:IPR014772); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G11670.1); Has 138 Blast hits to 130 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 43; Plants - 89; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Coordinates
chrA10:+:16062888..16069617
Molecular Weight (calculated)
121341.0 Da
IEP (calculated)
5.918
GRAVY (calculated)
-0.279
Length
1077 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLAGSLIKKV IMPPGAVTLD DVDLDQVSVD YVINCAKKGG MLELSEAIRD YHDHSGLPYM NSVGTADDFF LATTPESSGS PPKRAPPPIP ILTSASSSSI
0101: PTNPEWCESP SAPPLMRSES IDSPHAQELT VDDIEDFEDD NEEVGNFRIS RRTASDAADL VPKLPSFATG ITDDDLRETA FEILLACAGA SGGLIVPSKE
0201: KKNEKRRSRL IKKLGRKSES VSQSQSSSGL VSLLEMMRGQ MEISEAMDIR TRQGLLNALA GKAGKRMDSL LVPLELLCCV SRTEFSDKKA YLRWQKRQLN
0301: MLAEGLINHP VVGFGESGRK ANDLKSLLQR IEESESLPSS AGEVQRAECL KSLTEVAISL AERPARGDLT GEVCHWADGY HLNVRLYEKL LLCVFDMLNE
0401: GKLTEEVEEI LELLKSTWRV LGITETIHYT CYAWVLFRQY VITSERGLLR HAIQQLKKIP LKEQRGPQER IHLKTLQCRV ENEEISFLES FLSPIRSWAD
0501: KQLGDYHLHF AEGSLVMEDT VTVAMITWRL LLEESDRAMH SSSSDREQIE SYISSSIKNT FTRMSLTIDR SDRINEHPLA LLAEETKKLM KKDSTVFMPI
0601: LSQRHPQAIA FSASLIHKFY GNKLKPFLDG TEHLTEDVVS VFPPADSLEQ YLLELMTSVC GEDTNGPYFR KLIPYELESL SGTLVLRWIN AQLGRILSWV
0701: ERAFKQEHWD PISAQQRHGS SIVEVFRIVE ETVDQFFELK VPMRSIELSA LLRGIDNAFQ VYTNHVMEKL GSKDDLVPPV PVLTRYKKEA AIKVFVKKEL
0801: FESKLPDERW STNIDVPATA VLCVQLNTLH YAVSQLSKLE DSIWERWIAK RPREKIVIRK SLVEKTKSVN QKESFEGSRK DINAALDRIC EFTGTKIIFC
0901: DLREPFIENL YKPSVSQSRL EALIEALDTE LGQLCTVIME PLRDRIVTSL LQASLDGLLR VLLDGGPSRV FHPSESKLLE EDVEVLKEFF ISGGDGLPRG
1001: VVENQIARVR LVVKLHGYET RELIDDLRSR SSLDMQQGGR GKLGADTQTL VRVLCHRNDS EASLFLKKQY KIPKSHA
0101: PTNPEWCESP SAPPLMRSES IDSPHAQELT VDDIEDFEDD NEEVGNFRIS RRTASDAADL VPKLPSFATG ITDDDLRETA FEILLACAGA SGGLIVPSKE
0201: KKNEKRRSRL IKKLGRKSES VSQSQSSSGL VSLLEMMRGQ MEISEAMDIR TRQGLLNALA GKAGKRMDSL LVPLELLCCV SRTEFSDKKA YLRWQKRQLN
0301: MLAEGLINHP VVGFGESGRK ANDLKSLLQR IEESESLPSS AGEVQRAECL KSLTEVAISL AERPARGDLT GEVCHWADGY HLNVRLYEKL LLCVFDMLNE
0401: GKLTEEVEEI LELLKSTWRV LGITETIHYT CYAWVLFRQY VITSERGLLR HAIQQLKKIP LKEQRGPQER IHLKTLQCRV ENEEISFLES FLSPIRSWAD
0501: KQLGDYHLHF AEGSLVMEDT VTVAMITWRL LLEESDRAMH SSSSDREQIE SYISSSIKNT FTRMSLTIDR SDRINEHPLA LLAEETKKLM KKDSTVFMPI
0601: LSQRHPQAIA FSASLIHKFY GNKLKPFLDG TEHLTEDVVS VFPPADSLEQ YLLELMTSVC GEDTNGPYFR KLIPYELESL SGTLVLRWIN AQLGRILSWV
0701: ERAFKQEHWD PISAQQRHGS SIVEVFRIVE ETVDQFFELK VPMRSIELSA LLRGIDNAFQ VYTNHVMEKL GSKDDLVPPV PVLTRYKKEA AIKVFVKKEL
0801: FESKLPDERW STNIDVPATA VLCVQLNTLH YAVSQLSKLE DSIWERWIAK RPREKIVIRK SLVEKTKSVN QKESFEGSRK DINAALDRIC EFTGTKIIFC
0901: DLREPFIENL YKPSVSQSRL EALIEALDTE LGQLCTVIME PLRDRIVTSL LQASLDGLLR VLLDGGPSRV FHPSESKLLE EDVEVLKEFF ISGGDGLPRG
1001: VVENQIARVR LVVKLHGYET RELIDDLRSR SSLDMQQGGR GKLGADTQTL VRVLCHRNDS EASLFLKKQY KIPKSHA
0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
Arabidopsis Description
PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.