Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_01s0011g01030.t01 | plasma membrane |
| VIT_02s0012g00950.t01 | plasma membrane |
| VIT_19s0090g00010.t01 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06970.1 | VIT_01s0011g01030.t01 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | VIT_02s0012g00950.t01 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | VIT_19s0090g00010.t01 | AT2G18960.1 | 24163289 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13324 | Soybean | cytosol | 9.41 | 80.92 |
| KRH20669 | Soybean | endoplasmic reticulum | 74.96 | 76.59 |
| KRH13315 | Soybean | cytosol, endoplasmic reticulum, nucleus | 74.78 | 76.27 |
| Solyc01g096540.2.1 | Tomato | cytosol, plastid | 73.18 | 74.23 |
| AT5G06970.1 | Thale cress | cytosol | 70.52 | 72.12 |
| GSMUA_Achr2P01130_001 | Banana | extracellular, golgi | 20.43 | 71.65 |
| CDX69997 | Canola | cytosol, peroxisome, plastid | 68.29 | 71.27 |
| Bra009303.1-P | Field mustard | cytosol, peroxisome, plastid | 68.03 | 71.12 |
| Os03t0683700-02 | Rice | plasma membrane | 16.34 | 70.77 |
| CDX99020 | Canola | cytosol, peroxisome, plastid | 68.12 | 70.56 |
| KXG21868 | Sorghum | cytosol | 66.52 | 67.72 |
| TraesCS2D01G215400.1 | Wheat | nucleus | 66.07 | 67.21 |
| HORVU2Hr1G041780.2 | Barley | cytosol | 31.97 | 66.91 |
| TraesCS1A01G052200.3 | Wheat | cytosol, mitochondrion, nucleus | 65.72 | 66.91 |
| HORVU2Hr1G041800.16 | Barley | cytosol | 25.58 | 66.51 |
| GSMUA_Achr2P01140_001 | Banana | cytosol | 47.96 | 66.34 |
| TraesCS1B01G069300.2 | Wheat | nucleus | 65.72 | 65.78 |
| Zm00001d037867_P001 | Maize | cytosol | 66.25 | 63.82 |
| PGSC0003DMT400004282 | Potato | extracellular | 10.12 | 43.85 |
| Solyc02g071830.1.1 | Tomato | endoplasmic reticulum, extracellular | 11.63 | 36.49 |
| VIT_02s0025g04160.t01 | Wine grape | cytosol | 34.9 | 34.11 |
| VIT_11s0016g03330.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 23.62 | 31.82 |
| VIT_04s0008g03350.t01 | Wine grape | mitochondrion | 26.38 | 29.44 |
| VIT_05s0049g01560.t01 | Wine grape | nucleus | 24.87 | 27.45 |
Protein Annotations
| EntrezGene:100248009 | wikigene:100248009 | MapMan:21.1.1.3.2 | ProteinID:CCB58639 | ProteinID:CCB58639.1 | InterPro:DUF810 |
| UniProt:F6HVC7 | EMBL:FN596254 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010118 | GO:GO:0016020 |
| InterPro:IPR014770 | InterPro:IPR014772 | EntrezGene:LOC100248009 | wikigene:LOC100248009 | InterPro:Munc13_1 | InterPro:Munc13_dom-2 |
| PFAM:PF05664 | PFscan:PS51258 | PFscan:PS51259 | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF2 | TIGR:TC53939 |
| UniParc:UPI00021099B1 | ArrayExpress:VIT_13s0084g00630 | EnsemblPlantsGene:VIT_13s0084g00630 | EnsemblPlants:VIT_13s0084g00630.t01 | unigene:Vvi.5639 | RefSeq:XP_002262850 |
| RefSeq:XP_002262850.2 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr13:-:19671261..19740744
Molecular Weight (calculated)
126534.0 Da
IEP (calculated)
5.995
GRAVY (calculated)
-0.282
Length
1126 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEENAVELL QRYRRDRRVL LDYILSGSLI KKVLMPPGAV SLDDVDLDQV SVDYVLSCSK KGAMVELSEA IREYHDSTEF PNMNNTGSAN EFFLVTNPES
0101: SGSPPKRAPP PIPASAPSSI PILTPSPAPV LASSPISDLE TSPIPPLAAS PIMSSVSKSV SLNSTRDREL SIDDIDIDDL EEDDDVDEVD SLRMSRRKPN
0201: DAADLVLGLP SFATGITEDD LRETAYEVLL ASAGASGGLI VPSKEKKKDR KSKLMRKLGR SKSEHVKVQS QRAPGLVGLL EAMRVQMEVS EAMDIRTRQG
0301: LLNALVGKVG KRMDTLLIPL ELLCCISRTE FSDKKAYIRW QKRQLNMLEE GLINHPAVGF GESGRKASEL RILLAKIEES ESLPPSTGGL QRTECLRSLR
0401: EIAIPLAERP ARGDLTGEVC HWADGYHLNV RLYEKLLLSV FDILDEGKLT EEVEEILELL KSTWRVLGIN ETIHYTCYAW VLFRQFVITS EHGMLRHAIE
0501: QLKKIPLKEQ RGPQERLHLK SLQSKIEGEN GFRDINFLHS FLSPIKKWAD KQLGDYHLHF AQGSVMMEEI VAVAMISRRL LLEEPVGAIE STLVTDQEQI
0601: EAYVSSSTKH AFARILQVVE TLDTTHEHPL ALLAEETKKL LNKATALYMP VLSRRNPQAT FVAASLLHRL YGNKLKPFLD GAEHLTEDVV SVFPAADSLE
0701: QCIIAVITTS CEEGTADAYC RKLTQYQIET ISGTLVMRWV NAQLARVLGW VERAIQQERW DPISPQQRHA NSIVEVYRIV EETVDQFFAL KVPMRSAELS
0801: SLFRGIDNAF QVYASHVVDK LASKEDLIPP VPILTRYKKE AGIKAFVKKE LMDPRLPDER RSSEINVQTT PTLCVQLNTL YYAISQLNKL EDSIWERWTR
0901: KKPQERSIKR STDEKSRSSM QKDTFDGSRK DINAAIDRIC EYTGTKVIFW DLREPFIDNL YKPNVTHSRL EAIVEPLDMV LNQLCDIIVE PLRDRIVTGL
1001: LQAALDGLLR VILDGGPSRV FFPSDAKLLE EDLEVLKEFF ISGGDGLPRG VVENQVARVR HKIKLHSYET RELIEDLKSA SGSEMQGGRS NLGADTNTLL
1101: RILCHRSDSE ASHFLKKQFK IPRSAA
0101: SGSPPKRAPP PIPASAPSSI PILTPSPAPV LASSPISDLE TSPIPPLAAS PIMSSVSKSV SLNSTRDREL SIDDIDIDDL EEDDDVDEVD SLRMSRRKPN
0201: DAADLVLGLP SFATGITEDD LRETAYEVLL ASAGASGGLI VPSKEKKKDR KSKLMRKLGR SKSEHVKVQS QRAPGLVGLL EAMRVQMEVS EAMDIRTRQG
0301: LLNALVGKVG KRMDTLLIPL ELLCCISRTE FSDKKAYIRW QKRQLNMLEE GLINHPAVGF GESGRKASEL RILLAKIEES ESLPPSTGGL QRTECLRSLR
0401: EIAIPLAERP ARGDLTGEVC HWADGYHLNV RLYEKLLLSV FDILDEGKLT EEVEEILELL KSTWRVLGIN ETIHYTCYAW VLFRQFVITS EHGMLRHAIE
0501: QLKKIPLKEQ RGPQERLHLK SLQSKIEGEN GFRDINFLHS FLSPIKKWAD KQLGDYHLHF AQGSVMMEEI VAVAMISRRL LLEEPVGAIE STLVTDQEQI
0601: EAYVSSSTKH AFARILQVVE TLDTTHEHPL ALLAEETKKL LNKATALYMP VLSRRNPQAT FVAASLLHRL YGNKLKPFLD GAEHLTEDVV SVFPAADSLE
0701: QCIIAVITTS CEEGTADAYC RKLTQYQIET ISGTLVMRWV NAQLARVLGW VERAIQQERW DPISPQQRHA NSIVEVYRIV EETVDQFFAL KVPMRSAELS
0801: SLFRGIDNAF QVYASHVVDK LASKEDLIPP VPILTRYKKE AGIKAFVKKE LMDPRLPDER RSSEINVQTT PTLCVQLNTL YYAISQLNKL EDSIWERWTR
0901: KKPQERSIKR STDEKSRSSM QKDTFDGSRK DINAAIDRIC EYTGTKVIFW DLREPFIDNL YKPNVTHSRL EAIVEPLDMV LNQLCDIIVE PLRDRIVTGL
1001: LQAALDGLLR VILDGGPSRV FFPSDAKLLE EDLEVLKEFF ISGGDGLPRG VVENQVARVR HKIKLHSYET RELIEDLKSA SGSEMQGGRS NLGADTNTLL
1101: RILCHRSDSE ASHFLKKQFK IPRSAA
0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
Arabidopsis Description
PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.