Factsheet for Os03t0683700-02

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os04t0656100-01	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06970.1	Os04t0656100-01	AT2G18960.1	24163289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13324	Soybean	cytosol	33.85	67.18
HORVU2Hr1G041800.16	Barley	cytosol	82.31	49.42
Os10t0471000-01	Rice	cytosol, mitochondrion	27.69	21.82
TraesCS2D01G215400.1	Wheat	nucleus	89.23	20.96
TraesCS1A01G052200.3	Wheat	cytosol, mitochondrion, nucleus	88.85	20.89
KXG21868	Sorghum	cytosol	88.46	20.8
TraesCS1B01G069300.2	Wheat	nucleus	88.46	20.44
Zm00001d037867_P001	Maize	cytosol	88.08	19.59
VIT_13s0084g00630.t01	Wine grape	cytosol	70.77	16.34
KRH20669	Soybean	endoplasmic reticulum	66.54	15.7
KRH13315	Soybean	cytosol, endoplasmic reticulum, nucleus	66.15	15.58
Bra009303.1-P	Field mustard	cytosol, peroxisome, plastid	64.23	15.51
Solyc01g096540.2.1	Tomato	cytosol, plastid	66.15	15.5
CDX69997	Canola	cytosol, peroxisome, plastid	64.23	15.48
AT5G06970.1	Thale cress	cytosol	65.38	15.44
CDX99020	Canola	cytosol, peroxisome, plastid	64.23	15.36
Os09t0346700-01	Rice	plasma membrane	30.38	8.02
Os03t0138600-01	Rice	nucleus, plasma membrane	28.46	7.4
PGSC0003DMT400004282	Potato	extracellular	5.77	5.77
Os10t0470900-01	Rice	nucleus	7.31	4.09
HORVU2Hr1G041780.2	Barley	cytosol	4.62	2.23
GSMUA_Achr2P01140_001	Banana	cytosol	3.08	0.98
Os04t0568800-01	Rice	cytosol	0.0	0.0
Os04t0568850-00	Rice	cytosol	0.0	0.0
Os04t0568900-01	Rice	endoplasmic reticulum, plasma membrane	0.0	0.0
Os08t0390100-01	Rice	cytosol, plastid	0.0	0.0
Solyc02g071830.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Os03t0683700-02	EnsemblPlantsGene:Os03g0683700	GO:GO:0003674	GO:GO:0005215	GO:GO:0005575	GO:GO:0006810
GO:GO:0008150	GO:GO:0016020	GO:GO:0022857	GO:GO:0055085	InterPro:DUF810	InterPro:IPR014772
InterPro:Munc13_dom-2	PANTHER:PTHR31280	PANTHER:PTHR31280:SF2	PFscan:PS51259	ProteinID:BAS85782.1	SEG:seg
UniParc:UPI0003938CE4	UniProt:A0A0P0W1X5	MapMan:35.1	:	:	:

Description

Conserved hypothetical protein. (Os03t0683700-01);Hypothetical conserved gene. (Os03t0683700-02)

Coordinates

chr3:+:27246840..27250968

Molecular Weight (calculated)

29327.3 Da

IEP (calculated)

8.616

GRAVY (calculated)

-0.283

Length

260 amino acids

Sequence
(BLAST)

001: QLTMPKLCVR LNSLYYGISQ LSKLEDSINE RWARRKSESI NIRRSMSEKS KSAVSSQKNQ FDGSRKEINA AIDRICEFTG LKVIFWDLQQ PFIDNLYKNN
101: VSQARLDAIM EVLDTVLNQL CNVIVEQLRD RVVTGLLQAS LDGLLRVILD GGPTRVFSPS DATLLEEDLE ILKEFFISGG DGLPRGTVEN LVSRVRPVID
201: LIKQETRVLI DDLREVTQGA KSKFGTDSKT LLRVLCHRND SEASHYVKKQ FKIPSSAPAT

Best Arabidopsis Sequence Match ( AT5G06970.1 )
(BLAST)

0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G

Arabidopsis Description

PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.