Factsheet for Os10t0470900-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 18022940
nucleus: 26035336
extracellular: 26072143

msms PMID: 26072143 doi

B Du, Z Wei, Z Wang, X Wang, X Peng, B Du, R Chen, L Zhu, G He

State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China., State Key Laboratory of Hybrid Rice, College of Life Sciences, Wuhan University, Wuhan, 430072, China. Electronic address: gche@whu.edu.cn.

msms PMID: 18022940 doi

F Tan, G Li, BR Chitteti, Z Peng

Department of Biochemistry and Molecular Biology, Mississippi State University, Mississippi State, MS 39762, USA.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os10t0471000-01	Rice	cytosol, mitochondrion	6.9	9.7
Os09t0346700-01	Rice	plasma membrane	18.53	8.73
Os08t0390100-01	Rice	cytosol, plastid	12.07	8.32
Os03t0138600-01	Rice	nucleus, plasma membrane	16.38	7.6
Os03t0683700-02	Rice	plasma membrane	4.09	7.31
Os04t0568800-01	Rice	cytosol	2.8	6.44
Os04t0568850-00	Rice	cytosol	2.16	5.15
Os04t0568900-01	Rice	endoplasmic reticulum, plasma membrane	0.0	0.0

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:4348867	ProteinID:AAG21903.1	ProteinID:AAP54226.1	ProteinID:BAF26738.1
ProteinID:BAT11252.1	InterPro:DAZAP1_RRM2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR000504	InterPro:IPR012677	InterPro:Nucleotide-bd_a/b_plait_sf	EnsemblPlantsGene:Os10g0470900	EnsemblPlants:Os10t0470900-01	PFAM:PF00076
PFscan:PS50102	PANTHER:PTHR44291	UniProt:Q7XDI5	InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360
SUPFAM:SSF54928	UniParc:UPI00000A5814	RefSeq:XP_015614245.1	SEG:seg	:	:

Description

RNA binding protein JNucleotide-binding, alpha-beta plait domain containing protein. (Os10t0470900-01);Hypothetical conserved gene. (Os10t0470900-02);Hypothetical conserved gene. (Os10t0470900-03)

Coordinates

chr10:+:17431265..17436597

Molecular Weight (calculated)

45623.2 Da

IEP (calculated)

6.730

GRAVY (calculated)

-0.663

Length

464 amino acids

Sequence
(BLAST)

001: MESDQGKLFI GGISWETTEE KLRDHFAAYG DVSQAAVMRD KLTGRPRGFG FVVFSDPSSV DAALVDPHTL DGRTVDVKRA LSREEQQAAK AANPSAGGRH
101: ASGGGGGGGG AGGGGGGGGG DAGGARTKKI FVGGLPSNLT EDEFRQYFQT YGVVTDVVVM YDQNTQRPRG FGFITFDAED AVDRVLHKTF HDLSGKMVEV
201: KRALPREANP GSGSGGRSMG GGGGGYQSNN GPNSNSGGYD SRGDASRYGQ AQQGSGGYPG YGAGGYGAGT VGYGYGHANP GTAYGNYGAG GFGGVPAGYG
301: GHYGNPNAPG SGYQGGPPGA NRGPWGGQAP SGYGTGSYGG NAGYAAWNNS SAGGNAPTSQ AAGAGTGYGS QGYGYGGYGG DASYGNHGGY GGYGGRGDGA
401: GNPAAGGGSG YGAGYGSGNG GSGYPNAWAD PSQGGGFGAS VNGVSEGQSN YGSGYGGVQP RVAQ

Best Arabidopsis Sequence Match ( AT4G14300.2 )
(BLAST)

001: MDSDQGKLFV GGISWETDED KLREHFTNYG EVSQAIVMRD KLTGRPRGFG FVIFSDPSVL DRVLQEKHSI DTREVDVKRA MSREEQQVSG RTGNLNTSRS
101: SGGDAYNKTK KIFVGGLPPT LTDEEFRQYF EVYGPVTDVA IMYDQATNRP RGFGFVSFDS EDAVDSVLHK TFHDLSGKQV EVKRALPKDA NPGGGGRSMG
201: GGGSGGYQGY GGNESSYDGR MDSNRFLQHQ SVGNGLPSYG SSGYGAGYGN GSNGAGYGAY GGYTGSAGGY GAGATAGYGA TNIPGAGYGS STGVAPRNSW
301: DTPASSGYGN PGYGSGAAHS GYGVPGAAPP TQSPSGYSNQ GYGYGGYSGS DSGYGNQAAY GVVGGRPSGG GSNNPGSGGY MGGGYGDGSW RSDPSQGYGG
401: GYNDGQGRQG Q

Arabidopsis Description

RNP1Heterogeneous nuclear ribonucleoprotein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W034]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.