Factsheet for Os04t0568900-01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plasma membrane

Predictor Summary:

nucleus 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os04t0568850-00	Rice	cytosol	5.21	8.25
TraesCS2D01G398800.2	Wheat	cytosol	5.21	1.41
TraesCS2A01G401500.1	Wheat	cytosol	5.21	1.41
TraesCS2B01G419500.1	Wheat	cytosol, mitochondrion	4.56	1.23
KXG26932	Sorghum	cytosol	4.56	1.22
Zm00001d002640_P002	Maize	cytosol	3.91	1.05
CDX86760	Canola	cytosol	3.58	0.98
Bra040967.1-P	Field mustard	cytosol	3.58	0.98
AT4G11670.2	Thale cress	cytosol	3.58	0.93
Solyc08g080520.2.1	Tomato	cytosol	3.26	0.88
VIT_02s0025g04160.t01	Wine grape	cytosol	2.93	0.78
GSMUA_Achr11P...	Banana	cytosol	2.93	0.77
Os09t0346700-01	Rice	plasma membrane	1.63	0.51
Os03t0138600-01	Rice	nucleus, plasma membrane	0.65	0.2
Os08t0390100-01	Rice	cytosol, plastid	0.33	0.15
HORVU2Hr1G095440.1	Barley	cytosol, extracellular	0.0	0.0
Os03t0683700-02	Rice	plasma membrane	0.0	0.0
Os04t0568800-01	Rice	cytosol	0.0	0.0
Os10t0470900-01	Rice	nucleus	0.0	0.0
Os10t0471000-01	Rice	cytosol, mitochondrion	0.0	0.0
CDY59387	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:19.2.2.1.5.3.3	Gene3D:3.30.40.10	UniProt:A0A0P0WDS1	ProteinID:BAS90554.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0043161
GO:GO:0061630	InterPro:IPR001841	InterPro:IPR013083	EnsemblPlantsGene:Os04g0568900	EnsemblPlants:Os04t0568900-01	PFAM:PF13639
PFscan:PS50089	PANTHER:PTHR14155	PANTHER:PTHR14155:SF140	SMART:SM00184	SUPFAM:SSF57850	TMHMM:TMhelix
UniParc:UPI0000DD920F	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

Similar to RING finger protein 6 (RING-H2 protein). (Os04t0568900-01)

Coordinates

chr4:-:28592081..28595422

Molecular Weight (calculated)

34056.5 Da

IEP (calculated)

4.394

GRAVY (calculated)

0.074

Length

307 amino acids

Sequence
(BLAST)

001: ERQADWAYSR PVVALDLLWN LAFITVAAVV LVLSRGEDSP MPLRTWVAGY ALQCVVHMVC VAIEYRMRRG QRDRAPASAD EERGSDGSSS SSDDDVTEDD
101: RRGSCTDCVS IAKHLESANT MFSFIWWIIG FYWISAGGED VIRDAPQLYW LCIVFLAFDV FFVVFCVALA CIIGIAVCCC LPCIIAILYA VSDQEGASED
201: DIRQIPRYKF RRTDEPEKQT ADETGPFGGI MTECGTNQPI EKVLAPEDAE CCICLSAYDD GAELRELPCG HHFHCACIDK WLHINATCPL CKFNIRKSGS
301: SSGSEEV

Best Arabidopsis Sequence Match ( AT1G12760.1 )
(BLAST)

001: MSTETTTGNS SLIPASSSSS SSDAIDPAPL LFNGDDNEGN NGGGGGERRS VRRQGLREAA RFLSRASSGR VMREPSMLVR EAAAEQLEER QSDWAYSKPV
101: VVLDIVWNLA FVSVATAILV MSRKEHPIMP LRVWLLGYAL QCVLHMVCVC VEYRRRNRRR TNRTTTTTPP RSRSSSSSSS SSSLEEEALG SRRNSGVQDL
201: SLGHLDTESS SVAKHLESAN TMFSFIWWII GFYWVSAGGQ ELAQESPRIY WLSIVFLGFD VFFVVFCVAL ACVIGIAVCC CLPCIIAVLY AVADQEGASK
301: EDIEQLTKFK FRKLGDANKH TNDEAQGTTE GIMTECGTDS PIEHTLLQED AECCICLSAY EDGTELRELP CGHHFHCSCV DKWLYINATC PLCKYNILKS
401: SNLDREEV

Arabidopsis Description

E3 ubiquitin-protein ligase At1g12760 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN71]
SUBAcon: [plasma membrane,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.