CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86760	Canola	cytosol	97.58	53.98
Bra040967.1-P	Field mustard	cytosol	97.25	53.8
AT4G11670.2	Thale cress	cytosol	90.79	47.67
HORVU2Hr1G095440.1	Barley	cytosol, extracellular	9.69	41.38
VIT_02s0025g04160.t01	Wine grape	cytosol	53.63	28.82
Solyc08g080520.2.1	Tomato	cytosol	47.98	26.05
TraesCS2D01G398800.2	Wheat	cytosol	38.93	21.21
TraesCS2A01G401500.1	Wheat	cytosol	38.61	21.04
TraesCS2B01G419500.1	Wheat	cytosol, mitochondrion	38.29	20.86
KXG26932	Sorghum	cytosol	38.29	20.73
GSMUA_Achr11P...	Banana	cytosol	38.77	20.65
Zm00001d002640_P002	Maize	cytosol	37.96	20.58
CDX69997	Canola	cytosol, peroxisome, plastid	30.05	17.24
CDX99020	Canola	cytosol, peroxisome, plastid	30.21	17.2
CDY35919	Canola	cytosol	22.29	14.5
CDY40469	Canola	cytosol	22.13	14.41
CDY35337	Canola	cytosol	21.32	13.44
CDX77008	Canola	cytosol	21.49	13.42
CDY37722	Canola	mitochondrion	19.71	13.36
CDX79528	Canola	cytosol	20.19	12.59
CDX84688	Canola	cytosol	20.19	12.58
CDY23738	Canola	cytosol	19.55	12.14
CDY59176	Canola	cytosol	18.74	11.95
CDY53192	Canola	cytosol	18.74	11.95
CDX89822	Canola	cytosol	19.39	11.71
CDY18234	Canola	cytosol	19.06	11.51
Os04t0568800-01	Rice	cytosol	1.29	3.96
Os04t0568850-00	Rice	cytosol	0.16	0.52
Os04t0568900-01	Rice	endoplasmic reticulum, plasma membrane	0.0	0.0

Protein Annotations

EnsemblPlants:CDY59387	EnsemblPlantsGene:GSBRNA2T00026030001	InterPro:DUF810	InterPro:IPR014770	InterPro:IPR014772	InterPro:Munc13_1
InterPro:Munc13_dom-2	PANTHER:PTHR31280	PANTHER:PTHR31280:SF3	PFAM:PF05664	PFscan:PS51258	PFscan:PS51259
ProteinID:CDY59387	ProteinID:CDY59387.1	SEG:seg	UniParc:UPI0004EE6FC1	UniProt:A0A078J5A7	MapMan:35.1

Description

BnaC09g52690DBnaC09g52690D protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5A7]

Coordinates

chrLK033757:-:43897..48158

Molecular Weight (calculated)

70565.9 Da

IEP (calculated)

5.435

GRAVY (calculated)

-0.210

Length

619 amino acids

Sequence
(BLAST)

001: MSPQKPRDFG MLVSLASTVG LPPADCMRTE LIKLDTLSDD VGDKIQSYVQ NSIKGACARA AHFAYVKSHG ERTHALALLA NELSVIAKAE INEFVPVFSK
101: WLPECMMISA MLLHRFYGER LTPFLEGVSS LSGDVRKVVP AAYMLEEALT QLYNCHSKSK LHKPYLHKLK NYEIEKAVKP VMLDWLISQH DHILQWTRRA
201: FEIEEWEPVS VHQRHAPSIV EIFRIIEETV SQLFGLHLPV DITHLQALLS IIYHSLDTYL QRIYDQLVDK KLLYPAAPPL TRFTEGVMPA MKRKSLEFAE
301: PDNKMVTKLD ELTIPKLCIR LNTLCYIQKQ ISAIEDGIRK SLTLVRSSLD KRSNIETDEA EEENSLTHSE AVDELFATTY DSLRETNANC ITKTRDLIVI
401: FWDLRDMFLH ELTLTNAFAQ VLDNVCSLSY EDSRDMVVLS ICRSALEAYV RVLLDGGPTR AFSDSDIPLM EEDLSILKEF FIADGEGLPR SLVEQEAKQA
501: KEILDLYSLE SEMLIQMLMT ASELIDMGVS SEQRRLEDAQ TLVRVLCHKK DRTASKFLKR QYEFPMSSEY EDPTSNLPAL SEIVRSTSTR WSQTSQSSFS
601: SFKKKIQDAT SEIRNNSGW

Best Arabidopsis Sequence Match ( AT4G11670.4 )
(BLAST)

0001: MDSLLQRYRN DRRKLMEFLM SSGLVKELRS PSGSPTSLSP ADLDALSADY VLDCVKSGGV VDVSKGREKY NFDSSYPVTI HSESGDSYFL VSSPDLAGSP
0101: PHRMPPPPVN IEKSSNNGAD MSRHMDSSNT PSARDNYVFK EETPDIKPVK PIKIIPLGLP PLRTGLSDDD LREAAYELMI ASMLLSSVEA YPTHRRKIEK
0201: SSRLMLSLKR KDKPHLQPQI SNTHSEVINM IRVQMQISSK MDTCIRRNLV QLATLRTGEQ IDLPQLALGL LVGIFKSDFP NEKLYMKWKT RQANLLEEVL
0301: CFSPSLEKNE RATMRKCLAT IRDSKEWDVV VSASLRIEVL SSIRQVASKL SSLPGRCGIE EETYYWTAIY HLNIRLYEKL LFGVFDTLDE GQVIEDASSM
0401: LFHMKSIWST LGITENLHSA IYGWVLFQQF VCTGEPSLLG STIQELQKVT SAESGNPKED LYLSHLVCSR QTIGTDIHLG LVKAILTSVS AWCDDKLQDY
0501: HLHFGKKPRD FGMLVRLAST VGLPPADCTR TELIKLDTLS DDVSDKIQSY VQNSIKGACA RAAHFAYVKS HGERTHALAL LANELTVIAK VEINEFVPVF
0601: SKWLPECMMI SAMLLHRFYG ERLTPFLEGV SSLSGDVRKV VPAAYMLQEE LTQLYNCHSK SKLRKPYFHK LKNYEIEKAV KPVMLDWLIS QHDHILQWTR
0701: RAFEIEEWEP LSVQQRHAAS IVEIFRIIEE TVSQLFGLHL PVDITHLQAL LSLIYHSLDT YLQRVFDQLV DKKFLYPSAP PLTRFTENVM PVMKRKSLEF
0801: SEPDNKIVKK LDELTIPKLC IILNTLCYIQ KQISATEVGI RKSLTLVEAS LNKRSEIETD EAEVENSLTH SEAVDELFAT TYDSLRDTNA NCITKTRDLI
0901: GARAIFWDLR DMFLIQLYNG TVEGARLERI LPHIDSVLDT VCSLSYEDSR DMVVLSICRS ALEAYVRVLL DGGPTRAFSD SDITLMEEDL SILKEFFIAD
1001: GEGLPRSLVE QEAKQAKEIL DLYSLESDML IQMLMTASEL INMGVSSEQR RLEDAQTLVR VLCHKKDRNA SKFLKRQYEL PMSTEYEDVT LNLPALSEIV
1101: RSTSTHWSTA SQNSFSSIKK KIQEATSEIR NNSGW

Arabidopsis Description

Protein of unknown function (DUF810) [Source:TAIR;Acc:AT4G11670]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.