CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY35337	Canola	cytosol	97.28	98.17
AT2G25800.1	Thale cress	plastid	92.43	92.81
KRH62073	Soybean	cytosol, peroxisome	39.76	75.05
VIT_04s0008g03350.t01	Wine grape	mitochondrion	74.77	73.44
KRH62072	Soybean	cytosol, mitochondrion, nucleus	33.7	72.45
Solyc08g066600.2.1	Tomato	cytosol, mitochondrion, plastid	72.86	72.34
KRH52752	Soybean	nucleus	73.16	72.07
PGSC0003DMT400005705	Potato	mitochondrion	72.65	72.0
GSMUA_Achr3P16260_001	Banana	cytosol, mitochondrion	58.53	65.61
GSMUA_Achr6P26320_001	Banana	cytosol	57.42	65.03
GSMUA_Achr4P08290_001	Banana	cytosol	51.56	64.12
Os09t0346700-01	Rice	plasma membrane	63.07	63.45
Zm00001d020178_P002	Maize	plastid	62.46	63.03
EER98780	Sorghum	plastid	62.46	62.65
Zm00001d005638_P001	Maize	plastid	62.06	62.63
TraesCS5D01G192300.1	Wheat	mitochondrion, plastid	61.25	62.0
TraesCS5A01G187000.1	Wheat	mitochondrion, plastid	61.25	62.0
TraesCS5B01G185400.1	Wheat	mitochondrion, plastid	61.15	61.9
CDY40469	Canola	cytosol	57.11	59.52
CDY35919	Canola	cytosol	57.01	59.35
HORVU5Hr1G041860.5	Barley	plastid	56.31	56.77
Os08t0390100-01	Rice	cytosol, plastid	37.44	55.13
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	52.07	54.66
OQU80385	Sorghum	cytosol	45.61	54.46
HORVU4Hr1G057790.4	Barley	plastid	52.77	53.1
TraesCS4B01G199800.1	Wheat	plastid	52.57	52.57
TraesCS4D01G200800.1	Wheat	plastid	52.47	52.53
TraesCS4A01G104100.2	Wheat	cytosol	52.67	52.1
Zm00001d032274_P001	Maize	plastid	48.13	51.4
Solyc05g041240.1.1	Tomato	endoplasmic reticulum, golgi	15.74	48.15
CDY37722	Canola	mitochondrion	35.82	38.88
CDY53192	Canola	cytosol	37.84	38.62
CDY59176	Canola	cytosol	37.54	38.31
CDX84688	Canola	cytosol	38.04	37.93
CDY23738	Canola	cytosol	38.14	37.91
CDX79528	Canola	cytosol	37.94	37.87
CDX89822	Canola	cytosol	38.65	37.37
CDY18234	Canola	cytosol	38.14	36.88
CDX69997	Canola	cytosol, peroxisome, plastid	27.95	25.67
CDX99020	Canola	cytosol, peroxisome, plastid	27.85	25.39
CDY59387	Canola	cytosol	13.42	21.49
CDX86760	Canola	cytosol	22.2	19.66

Protein Annotations

EnsemblPlants:CDX77008	EnsemblPlantsGene:GSBRNA2T00127572001	InterPro:DUF810	InterPro:IPR014770	InterPro:IPR014772	InterPro:Munc13_1
InterPro:Munc13_dom-2	PANTHER:PTHR31280	PANTHER:PTHR31280:SF15	PFAM:PF05664	PFscan:PS51258	PFscan:PS51259
ProteinID:CDX77008	ProteinID:CDX77008.1	SEG:seg	UniParc:UPI0004EE66F0	MapMan:35.1	:

Description

BnaC04g38030D

Coordinates

chrLK031809:-:448471..451915

Molecular Weight (calculated)

109739.0 Da

IEP (calculated)

8.277

GRAVY (calculated)

-0.255

Length

991 amino acids

Sequence
(BLAST)

001: MAHLFRELSL GHSKRETTPP PPPSMASVIP SDLPPSPLGQ LAVQFSESDL RLIAYEIFVA ACRSATGKPL SSAVSSVSVA NPDSPSNGAS PASPAAQRSL
101: TAAAASKMKK ALGMKSLSSL SPGSTKSPGS GSGSGGKSKR PTTVGELMRI QMRVSESVDS RVRRAFLRIA ASQVGRKIES VVLPLELLQQ LKSSDFTDQQ
201: EYDAWLKRSL KVLEAGLLFH PRVPLDKTTS SQRLRQIIHG ALDRPLETGR NNEQMQSLRS AVMSLATRSD GSFSDSCHWA DGSPLNLRLY EMLLEACFDS
301: NDATSMVEEV DDLMEHIKKT WVILGINQML HNLCFTWLLF SRYVVTGQAE MDLLYACESQ LAEVAKDAKT TKDPEYSQVL SATLSAILGW AEKRLLAYHD
401: TFDRSNVGTM EGIVSLGVSA ARILVEDISN EYRRRRKGEV DVARTRIETY IRSSLRTAFA QASRMEKADS SRRASRNQKN PLPVLAILAK DIGELAVQEK
501: RMFSPIWKRW HPFAAGVAVA TLHVCYGNEI KQFISGISEL TPDAVQVLRA ADKLEKDLVQ IAVEDSVDSD DGGKAIIREM PPFEAETVIA NLVKDWIKSR
601: IDRLKEWVDR NLQQEVWNPV ENQEGGYALS AAEVLRITDE TLEAFFQLPI PMHPAVLPDL IIGLDKYLQY YVSKAKSGCG SRTTYMPTMP ALTRCTTESK
701: FQGVWKKKEK SPPSQKKNSQ VPIANGEGGS FGVTQICVRI NSLHKIRSEL DVVEKRVITH LRNCESAHTD DFSNGLGKKF ELTPAACIEG VQQLSESLAY
801: KVVFHDLSHA LWDGLYIGDL SSSRIEPFLK GLEQNLTVIA ETVHERVRTR IITDIMRASF DGFLLVLLAG GPSRAFTIQD SQIMEQDFKS MKDLFWANGD
901: GLAMDLIDKF STTVRGVLPL FSTDTDSLIE RFKGMTLEAY GSSAKSRLPL PPTSGQWSGM EPNTLLRVLC YRNDESATRF LKKTYNLPKK L

Best Arabidopsis Sequence Match ( AT2G25800.1 )
(BLAST)

001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL

Arabidopsis Description

Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.