Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d020178_P002 | Maize | plastid | 95.93 | 95.93 |
| EER98780 | Sorghum | plastid | 95.62 | 95.04 |
| Os09t0346700-01 | Rice | plasma membrane | 88.29 | 88.02 |
| TraesCS5D01G192300.1 | Wheat | mitochondrion, plastid | 86.05 | 86.31 |
| TraesCS5B01G185400.1 | Wheat | mitochondrion, plastid | 85.74 | 86.01 |
| TraesCS5A01G187000.1 | Wheat | mitochondrion, plastid | 85.54 | 85.8 |
| HORVU5Hr1G041860.5 | Barley | plastid | 77.39 | 77.31 |
| GSMUA_Achr3P16260_001 | Banana | cytosol, mitochondrion | 65.68 | 72.96 |
| GSMUA_Achr6P26320_001 | Banana | cytosol | 62.22 | 69.83 |
| GSMUA_Achr4P08290_001 | Banana | cytosol | 56.42 | 69.51 |
| VIT_11s0016g03330.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 55.6 | 65.31 |
| Zm00001d032274_P001 | Maize | plastid | 61.1 | 64.66 |
| Solyc08g066600.2.1 | Tomato | cytosol, mitochondrion, plastid | 65.27 | 64.23 |
| KRH62073 | Soybean | cytosol, peroxisome | 34.22 | 64.0 |
| PGSC0003DMT400005705 | Potato | mitochondrion | 64.66 | 63.5 |
| AT2G25800.1 | Thale cress | plastid | 62.73 | 62.41 |
| CDY35337 | Canola | cytosol | 62.22 | 62.22 |
| VIT_04s0008g03350.t01 | Wine grape | mitochondrion | 63.85 | 62.14 |
| CDX77008 | Canola | cytosol | 62.63 | 62.06 |
| Bra034270.1-P | Field mustard | cytosol | 62.73 | 62.03 |
| KRH62072 | Soybean | cytosol, mitochondrion, nucleus | 28.92 | 61.61 |
| KRH52752 | Soybean | nucleus | 62.63 | 61.13 |
| GSMUA_Achr4P15490_001 | Banana | golgi, plasma membrane | 57.13 | 59.43 |
| KRH60226 | Soybean | cytosol | 34.11 | 58.88 |
| AT2G20010.2 | Thale cress | nucleus | 56.92 | 58.72 |
| CDY40469 | Canola | cytosol | 56.82 | 58.68 |
| Bra039035.1-P | Field mustard | cytosol | 56.82 | 58.61 |
| KRH07260 | Soybean | cytosol | 56.72 | 58.57 |
| CDY35919 | Canola | cytosol | 56.62 | 58.4 |
| KRH74278 | Soybean | cytosol | 56.92 | 58.35 |
| PGSC0003DMT400070575 | Potato | cytosol | 54.18 | 55.94 |
| Solyc05g018180.2.1 | Tomato | cytosol, nucleus | 53.97 | 55.56 |
| KRH41514 | Soybean | cytosol | 43.58 | 54.31 |
| KRH60225 | Soybean | cytosol | 20.06 | 52.53 |
| Solyc05g041240.1.1 | Tomato | endoplasmic reticulum, golgi | 14.66 | 44.44 |
| Zm00001d027590_P001 | Maize | mitochondrion | 38.29 | 35.95 |
| Zm00001d032737_P001 | Maize | cytosol | 34.93 | 34.27 |
| Zm00001d010939_P004 | Maize | mitochondrion | 33.91 | 32.91 |
| Zm00001d037867_P001 | Maize | cytosol | 28.72 | 24.12 |
| Zm00001d002640_P002 | Maize | cytosol | 23.73 | 20.4 |
Protein Annotations
| EnsemblPlants:Zm00001d005638_P001 | EnsemblPlants:Zm00001d005638_T001 | EnsemblPlantsGene:Zm00001d005638 | InterPro:DUF810 | InterPro:IPR014770 | InterPro:IPR014772 |
| InterPro:Munc13_1 | InterPro:Munc13_dom-2 | ncoils:Coil | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF15 | PFAM:PF05664 |
| PFscan:PS51258 | PFscan:PS51259 | ProteinID:ONM21583.1 | ProteinID:ONM21591.1 | SEG:seg | UniParc:UPI0008428055 |
| UniProt:A0A1D6EP90 | MapMan:35.1 | : | : | : | : |
Description
Retinol dehydrogenase 13
Coordinates
chr2:-:181606124..181613614
Molecular Weight (calculated)
108474.0 Da
IEP (calculated)
8.339
GRAVY (calculated)
-0.301
Length
982 amino acids
Sequence
(BLAST)
(BLAST)
001: MARLFRESRR DSSPFSSSSN GFLPPASASS PSVSALPSPF PDLGVALSTA DLREAAYEVL VAASRTTGGK PLTYIPQSSS VAAGATASPA SSASSASSAS
101: LQRSLTSAAA SKMKKALGLR SSASSKGVGS PGSGGKAAPP RRPATFGELM RVQMRISEPT DARIRRGLLR IAASQLGRRA ESMVLPLEFL QQFKASDFSD
201: PQEYEAWRSR NLKLLEAGLL VHPLVPLNKS DSSVQRLRQI IRGAYDRPLE TGKNSESMQG LRTCVMSLAG RSHDGTSDGC HWADGFPLNL HLYQTLVEAC
301: FDNDEGTVVD EIDEVMELLK KTWVILGINE LLHNLCFTWA LFNHFVMSGQ VDIELLSAAE NQLAEVAKDA KTTKDPNYCK VLSSTLSSIM GWTEKRLLAY
401: HETFNTSNIE SMQGIVSIGV SAARVLVEDI SHEYRRRRKE ETDVARSRVE TYIRSSLRTA FAQRMEEADS KRSSRNPTPV LSILAKDISD LATKEKKLYS
501: PILKTWHPLA SGVAVATLHS CYGNELKQFV AGLTELTPDT VEVLKSADKL EKDLVNIAVE DSVDSDDGGK SLIREMPPYE AENAIANLVK VWIKERVDRL
601: KGWVDRNLKQ ETWNPGANRD NFAPSSVEML RVIGETLDAF FQLPIPMHPA LLPDLTVGLD RSLQLYVAKA KSGCGARNSF MPQLPPLTRC EVGSKLLFKK
701: KEKPQNLQVR VSQNGASNGN DPLGLPQLCV RLNTLQYIRG EFENLEKKIK TSLRNVESAQ ADITDGLNIK FELCQAACQE GIQQICETTA YKVMFYDLGH
801: VLWDTLYVGD TASNRVEVLL RELDPVLETV SSMVHNKVRN RAITALMKAT FDGFLLVLLA GGPLRTFTRQ DSQIIEDDFR ALRDLYLADG DGLPEELVDK
901: ASSQVKNVLP LFRADSESLI ERFKRMMVES NRPASKNRLP LPPTTGHWSP NEPNTVLRVL CYRNDETATK FLKKTYNLPK KI
101: LQRSLTSAAA SKMKKALGLR SSASSKGVGS PGSGGKAAPP RRPATFGELM RVQMRISEPT DARIRRGLLR IAASQLGRRA ESMVLPLEFL QQFKASDFSD
201: PQEYEAWRSR NLKLLEAGLL VHPLVPLNKS DSSVQRLRQI IRGAYDRPLE TGKNSESMQG LRTCVMSLAG RSHDGTSDGC HWADGFPLNL HLYQTLVEAC
301: FDNDEGTVVD EIDEVMELLK KTWVILGINE LLHNLCFTWA LFNHFVMSGQ VDIELLSAAE NQLAEVAKDA KTTKDPNYCK VLSSTLSSIM GWTEKRLLAY
401: HETFNTSNIE SMQGIVSIGV SAARVLVEDI SHEYRRRRKE ETDVARSRVE TYIRSSLRTA FAQRMEEADS KRSSRNPTPV LSILAKDISD LATKEKKLYS
501: PILKTWHPLA SGVAVATLHS CYGNELKQFV AGLTELTPDT VEVLKSADKL EKDLVNIAVE DSVDSDDGGK SLIREMPPYE AENAIANLVK VWIKERVDRL
601: KGWVDRNLKQ ETWNPGANRD NFAPSSVEML RVIGETLDAF FQLPIPMHPA LLPDLTVGLD RSLQLYVAKA KSGCGARNSF MPQLPPLTRC EVGSKLLFKK
701: KEKPQNLQVR VSQNGASNGN DPLGLPQLCV RLNTLQYIRG EFENLEKKIK TSLRNVESAQ ADITDGLNIK FELCQAACQE GIQQICETTA YKVMFYDLGH
801: VLWDTLYVGD TASNRVEVLL RELDPVLETV SSMVHNKVRN RAITALMKAT FDGFLLVLLA GGPLRTFTRQ DSQIIEDDFR ALRDLYLADG DGLPEELVDK
901: ASSQVKNVLP LFRADSESLI ERFKRMMVES NRPASKNRLP LPPTTGHWSP NEPNTVLRVL CYRNDETATK FLKKTYNLPK KI
001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL
Arabidopsis Description
Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.