Factsheet for PGSC0003DMT400070575

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g018180.2.1	Tomato	cytosol, nucleus	96.21	95.91
VIT_11s0016g03330.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	60.15	68.42
KRH74278	Soybean	cytosol	60.04	59.6
KRH60225	Soybean	cytosol	23.45	59.47
KRH07260	Soybean	cytosol	59.31	59.31
GSMUA_Achr3P16260_001	Banana	cytosol, mitochondrion	53.94	58.03
GSMUA_Achr4P08290_001	Banana	cytosol	48.37	57.72
AT2G20010.2	Thale cress	nucleus	57.73	57.67
Bra039035.1-P	Field mustard	cytosol	57.41	57.35
KRH60226	Soybean	cytosol	34.28	57.29
CDY35919	Canola	cytosol	57.31	57.25
KRH41514	Soybean	cytosol	47.42	57.23
CDY40469	Canola	cytosol	57.1	57.1
GSMUA_Achr6P26320_001	Banana	cytosol	52.47	57.03
PGSC0003DMT400005705	Potato	mitochondrion	59.73	56.8
Zm00001d020178_P002	Maize	plastid	56.26	54.48
Zm00001d005638_P001	Maize	plastid	55.94	54.18
Os09t0346700-01	Rice	plasma membrane	55.73	53.81
EER98780	Sorghum	plastid	55.84	53.74
TraesCS5A01G187000.1	Wheat	mitochondrion, plastid	54.78	53.22
TraesCS5B01G185400.1	Wheat	mitochondrion, plastid	54.68	53.12
TraesCS5D01G192300.1	Wheat	mitochondrion, plastid	54.47	52.91
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	49.84	50.21
OQU80385	Sorghum	cytosol	43.64	50.0
HORVU5Hr1G041860.5	Barley	plastid	50.79	49.14
Os08t0390100-01	Rice	cytosol, plastid	34.6	48.89
Zm00001d032274_P001	Maize	plastid	47.42	48.6
HORVU4Hr1G057790.4	Barley	plastid	49.84	48.12
TraesCS4D01G200800.1	Wheat	plastid	49.53	47.58
TraesCS4B01G199800.1	Wheat	plastid	49.53	47.53
TraesCS4A01G104100.2	Wheat	cytosol	49.42	46.91
PGSC0003DMT400017602	Potato	mitochondrion	4.94	42.34
PGSC0003DMT400044198	Potato	cytosol	37.22	34.74
PGSC0003DMT400034999	Potato	cytosol	36.28	33.56
PGSC0003DMT400004282	Potato	extracellular	5.99	21.92

Protein Annotations

EnsemblPlants:PGSC0003DMT400070575	EnsemblPlantsGene:PGSC0003DMG400027431	InterPro:DUF810	InterPro:IPR014770	InterPro:IPR014772	InterPro:Munc13_1
InterPro:Munc13_dom-2	PANTHER:PTHR31280	PANTHER:PTHR31280:SF15	PFAM:PF05664	PFscan:PS51258	PFscan:PS51259
PGSC:PGSC0003DMG400027431	SEG:seg	UniParc:UPI000294D78C	UniProt:M1CMD4	MapMan:35.1	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400027431]

Coordinates

chr5:-:18643666..18649210

Molecular Weight (calculated)

106811.0 Da

IEP (calculated)

7.661

GRAVY (calculated)

-0.175

Length

951 amino acids

Sequence
(BLAST)

001: MVSYAYRDAA AQTVSTKKVE RPISPSDELT YPFGELGVDL TQSELRETAY EILVGACRSF NSGKTLKYVS SSVKSSSSSS SKAASKVKKA LGLKKNLESV
101: SGKKASTVGE LMRVQMGISE QTDSRVRRAF LRVAAGQLGR RLESMVLPLE FLQQFKISDF PNPQEYEVWQ RRNLKLLEAG LVLHPCLPLD ETDTRPKQLQ
201: QIIRGALVKP METTKHSESM LELRNLSTSL ACRSFDGSSP EICHWADGTP LNLRLYQILL EACFDVNDKI SVIEEVDEVL EIIKKTWVIL GIDQMFHNIC
301: FSWVLFHRYV ACSQVQNELL FAADNLLSDV AKDSKAVKHL TCSQTLSSLL GLIVGWAEKR LLVYHDSFYR DNIDSMQSLL SMSLSATEIL VEHSSGNYQK
401: RSKEVDVAFS RVDSYIRASM LRTFSQEKER LISSRKSSKQ QHNPLPILSI LAQNVSDLAF NEKEIYSAVL KRWHPLATGV AVATLHACYG NELKKFVSGI
501: SELTPDAVQV LIAADKLEKD LVQMAVMDAA DSEDGGKSLM TEMTPYEAEA VIANLVKSWI STRVDRLKEW VTRNLQQEIW NPRANKERVA PSGVEVLRSI
601: DETFEAFFLL PIPMHPALLP ELKNGLDRCL QNYILKAISG CGSRSTFVPT MPALTRCSTG SKFRVFRKKE RPPMVSYRKS QSGTTNGDDS FSIPQLCVRI
701: NTLHSIRKEL DVLEKRTISQ LRDNTRVHDD NIVDGLGKCF ELSVASCLEG IQQLSEAISY KIIFHELRHI FWDYVYVADV SSSRIEPFLQ ELENNLEIIS
801: ATVHDRVRTR VITNVMKASF DGFLLILLAG GPSRAFSLAD AAIIDEDLKF LMDLFWSDGD GLPTDLIDKF SATLKGILPL FHTDTAILIE QLEHATEDNL
901: GTSAKSRLPL PPTSGNWSPT ELSTIMRVLC YRNDKIATKF LKKKYNLPKK L

Best Arabidopsis Sequence Match ( AT2G25800.1 )
(BLAST)

001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL

Arabidopsis Description

Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.