Factsheet for GSMUA_Achr6P26320_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P16260_001	Banana	cytosol, mitochondrion	83.43	82.58
GSMUA_Achr9P06130_001	Banana	nucleus	16.57	79.67
GSMUA_Achr4P08290_001	Banana	cytosol	60.34	66.25
VIT_11s0016g03330.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	61.94	64.83
TraesCS5D01G192300.1	Wheat	mitochondrion, plastid	70.17	62.72
TraesCS5B01G185400.1	Wheat	mitochondrion, plastid	70.06	62.61
Zm00001d020178_P002	Maize	plastid	70.17	62.53
Os09t0346700-01	Rice	plasma membrane	70.17	62.34
TraesCS5A01G187000.1	Wheat	mitochondrion, plastid	69.71	62.31
EER98780	Sorghum	plastid	70.29	62.25
Zm00001d005638_P001	Maize	plastid	69.83	62.22
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	66.74	61.86
VIT_04s0008g03350.t01	Wine grape	mitochondrion	68.34	59.27
KRH62072	Soybean	cytosol, mitochondrion, nucleus	31.09	59.0
HORVU5Hr1G041860.5	Barley	plastid	65.71	58.49
AT2G25800.1	Thale cress	plastid	65.71	58.26
Os08t0390100-01	Rice	cytosol, plastid	44.69	58.1
Solyc08g066600.2.1	Tomato	cytosol, mitochondrion, plastid	65.71	57.62
CDY35337	Canola	cytosol	64.46	57.43
CDX77008	Canola	cytosol	65.03	57.42
Bra034270.1-P	Field mustard	cytosol	65.14	57.4
PGSC0003DMT400005705	Potato	mitochondrion	65.6	57.4
KRH60226	Soybean	cytosol	37.26	57.29
KRH62073	Soybean	cytosol, peroxisome	34.29	57.14
OQU80385	Sorghum	cytosol	53.94	56.87
KRH52752	Soybean	nucleus	65.14	56.66
KRH07260	Soybean	cytosol	59.77	54.99
KRH74278	Soybean	cytosol	59.66	54.49
HORVU4Hr1G057790.4	Barley	plastid	60.91	54.11
Zm00001d032274_P001	Maize	plastid	57.37	54.09
TraesCS4D01G200800.1	Wheat	plastid	60.57	53.54
TraesCS4B01G199800.1	Wheat	plastid	60.57	53.48
AT2G20010.2	Thale cress	nucleus	57.83	53.15
CDY40469	Canola	cytosol	57.49	52.89
Bra039035.1-P	Field mustard	cytosol	57.37	52.73
CDY35919	Canola	cytosol	57.37	52.73
TraesCS4A01G104100.2	Wheat	cytosol	60.34	52.69
PGSC0003DMT400070575	Potato	cytosol	57.03	52.47
Solyc05g018180.2.1	Tomato	cytosol, nucleus	56.34	51.68
KRH41514	Soybean	cytosol	46.17	51.27
KRH60225	Soybean	cytosol	20.46	47.73
Solyc05g041240.1.1	Tomato	endoplasmic reticulum, golgi	16.57	44.75
GSMUA_AchrUn_...	Banana	cytosol	37.71	37.71
GSMUA_Achr1P16870_001	Banana	cytosol	38.63	37.39
GSMUA_Achr1P10950_001	Banana	cytosol	38.17	35.84
GSMUA_Achr4P29190_001	Banana	cytosol	35.54	35.75
GSMUA_Achr1P03530_001	Banana	cytosol	36.0	35.59
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	8.91	24.3
GSMUA_Achr2P01140_001	Banana	cytosol	22.17	23.83
GSMUA_Achr11P...	Banana	cytosol	25.37	19.11

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26320_001	EnsemblPlants:GSMUA_Achr6T26320_001	EnsemblPlantsGene:GSMUA_Achr6G26320_001	InterPro:DUF810	InterPro:IPR014770	InterPro:IPR014772
InterPro:Munc13_1	InterPro:Munc13_dom-2	PANTHER:PTHR31280	PANTHER:PTHR31280:SF15	PFAM:PF05664	PFscan:PS51258
PFscan:PS51259	SEG:seg	UniParc:UPI0002966431	UniProt:M0TAC7	MapMan:35.1	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G26320_001]

Coordinates

chr6:+:27113206..27117837

Molecular Weight (calculated)

97341.5 Da

IEP (calculated)

7.000

GRAVY (calculated)

-0.248

Length

875 amino acids

Sequence
(BLAST)

001: MARVLGGGSL GDSKRESNGS SSLRISSSTA AADMPSPFGQ LGVALSDREL RETAYEIFVA ACRTTGAKSL AYAPQAERSP SLSPSSASPL QSPSKSAKKP
101: ATVGELMRVQ MRVSEQTDSR IRKGLVRIAA GQLGRRVESM VLPLELLQQF KTSDFPDQQE YEAWKTRNLN VLEAGLLVHP LLPLEKSDTA SQRLRQIIRG
201: ASGKPIETGR NSESMQVLRS AVMSIACRSP DGSSDFCHWA DGFPLNLRLY QMLLEACFDD SEDGSIIDEI DEVLELIKKT WVILGINQIL HNLCFAWVLF
301: HCFVTTGEAD IDLLFAADNQ IAEVAKDAKA TKDPDYSKIL SSTLSSILGW TEKRLLAYHD TFIASNIEFF QGIISLGVSA AKILVEDISN EYRRKRREES
401: DVARSRVDTY IRSSLRTAFA QRMEQADSRR SSKNHNTPTP VLSILAKDIG ELARKEKELF SPILKKWHPL AAGVAVATLH SCYGSELRQF ISSATEVTPD
501: TVEVLKAADK LEKALVHIAV EDSVDSEDGG KSLIREMPPY EADIAIANLV KVWIKTREER LKEWVDRNLQ QENWNPRANM ENCAPSATEA LQIINETLDA
601: FFQLPIQMHA MLLPDLSIEL DKSLQRYALK VKSGCGTRGS FVPPFPALTR CDIGSKLWKK KENFEMTVAA CHEGILQLCE TTAYKVIFHD MSHVLWDALY
701: VGGTASSRID PFIKEAAHIL ETISNTVHSR VRNRVVTAMM KASFDGFLLV LLAGGPSRAF SRQDSEIIEV DFRSLKDMYL ADGDGLPQEL VEKAASQVKN
801: VLPLFHTDTE NLIERFKRLI TETYGAASKS RYPLPPTSGN WNPTEANTVL RVLCHRHDEA ATRFLKKTYN LPKKL

Best Arabidopsis Sequence Match ( AT2G25800.1 )
(BLAST)

001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL

Arabidopsis Description

Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.