Factsheet for VIT_11s0016g03330.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, mitochondrion, plastid, cytosol, plasma membrane, golgi, nucleus

Predictor Summary:

plastid 2
nucleus 2
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus, plastid, secretory
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P08290_001	Banana	cytosol	64.35	67.5
KRH60225	Soybean	cytosol	28.71	64.0
VIT_04s0008g03350.t01	Wine grape	mitochondrion	76.08	63.03
GSMUA_Achr3P16260_001	Banana	cytosol, mitochondrion	65.55	61.99
GSMUA_Achr6P26320_001	Banana	cytosol	64.83	61.94
KRH74278	Soybean	cytosol	70.22	61.27
KRH07260	Soybean	cytosol	69.5	61.09
PGSC0003DMT400070575	Potato	cytosol	68.42	60.15
Solyc05g018180.2.1	Tomato	cytosol, nucleus	68.06	59.64
AT2G20010.2	Thale cress	nucleus	66.27	58.19
Bra039035.1-P	Field mustard	cytosol	65.31	57.35
CDY35919	Canola	cytosol	65.07	57.14
CDY40469	Canola	cytosol	64.95	57.1
KRH41514	Soybean	cytosol	53.47	56.73
OQU80385	Sorghum	cytosol	55.98	56.39
Os09t0346700-01	Rice	plasma membrane	66.27	56.24
Zm00001d020178_P002	Maize	plastid	65.79	56.01
Zm00001d005638_P001	Maize	plastid	65.31	55.6
EER98780	Sorghum	plastid	65.67	55.57
TraesCS5B01G185400.1	Wheat	mitochondrion, plastid	64.47	55.06
TraesCS5D01G192300.1	Wheat	mitochondrion, plastid	64.35	54.95
TraesCS5A01G187000.1	Wheat	mitochondrion, plastid	64.0	54.65
KRH60226	Soybean	cytosol	36.96	54.31
HORVU5Hr1G041860.5	Barley	plastid	63.52	54.02
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	58.97	52.22
HORVU4Hr1G057790.4	Barley	plastid	58.85	49.95
Zm00001d032274_P001	Maize	plastid	55.14	49.68
TraesCS4B01G199800.1	Wheat	plastid	58.25	49.14
TraesCS4D01G200800.1	Wheat	plastid	58.13	49.09
TraesCS4A01G104100.2	Wheat	cytosol	58.13	48.5
Os08t0390100-01	Rice	cytosol, plastid	36.96	45.91
VIT_05s0049g01560.t01	Wine grape	nucleus	43.9	35.98
VIT_13s0084g00630.t01	Wine grape	cytosol	31.82	23.62
VIT_02s0025g04160.t01	Wine grape	cytosol	27.51	19.97

Protein Annotations

EntrezGene:100267936	wikigene:100267936	MapMan:35.1	ProteinID:CCB51494	ProteinID:CCB51494.1	ncoils:Coil
InterPro:DUF810	UniProt:F6HGL8	EMBL:FN595756	InterPro:IPR014770	InterPro:IPR014772	EntrezGene:LOC100267936
wikigene:LOC100267936	InterPro:Munc13_1	InterPro:Munc13_dom-2	PFAM:PF05664	PFscan:PS51258	PFscan:PS51259
PANTHER:PTHR31280	PANTHER:PTHR31280:SF15	UniParc:UPI00021081F8	ArrayExpress:VIT_11s0016g03330	EnsemblPlantsGene:VIT_11s0016g03330	EnsemblPlants:VIT_11s0016g03330.t01
unigene:Vvi.10954	RefSeq:XP_002280525	RefSeq:XP_002280525.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr11:-:2694438..2699874

Molecular Weight (calculated)

94434.4 Da

IEP (calculated)

7.419

GRAVY (calculated)

-0.147

Length

836 amino acids

Sequence
(BLAST)

001: MRVSEQTDSR IRRGLLRIAA GQLGRRIESI VLPLELLQQF KSSDFPKQPE YEAWQKRNLK VLEAGLVLHP YLPLDKTDTA SQRLRQIIRG ALEKPIETGK
101: NSESMQVLRN AVMSLACRSF DGHASETCHW ADGSPLNLRI YQMLLEACFD INDETSIIEE VDDVLELIKK TWVILGMNQM LHNLCFAWVL FHRYIATSQV
201: ENDLLFAVNN LLMEVEKDAK ATKDPVYLKA LSSTLSSILV WAEKRLLTYH DTFCNGDIDL MQIVVSLGVT AAKILVEDIS HEYRRKRKEV DVARDRVDTY
301: IRSSLRAAFA QRMEKVDSMR QLSKNRKNSL PVLSILAQDI SELAFNEKGM FSPILKKWHP LAAGVAVATL HACYGNELKQ FVSSISELTP DALQVLKSAD
401: KLEKDLVLIA VADSVESEDG GKSIIQAMPP YEAEAVVAKL VKSWIRTRLD ILKEWVDRNL QQEVWNPQAN KERFAPSAVE VLRIIDETVE AFFLLPIQIH
501: PVLLPDLLTG LDRCLQQYIS KAKSGCGTRS TFIPTLPALT RCSTGSKFGA FKKKEKPHIA QRRKAQVGTT NGDGSFAIPQ LCVRINTLQH IRKELQVLEK
601: RIVTHLRNCE STHVEDNADG LGKRFELSAA ACLEGIQQLC EATAYKVIFH DLSHVFWDGL YVGEVSSSRI EPLLQELEQI LEIVSTTVHD RVRTRVITDI
701: MRASFDGFLL VLLAGGPSRA FTLQDSEIIE EDFKFLMELF WANGDGLPTE LIDKHSTIVK SILLLFHSDT ESLIGRFRSV SLETYGSSAK SRLPLPPTSG
801: QWNPTEPNTV LRVLCYRHDD MAAKFLKKNY NLPKKL

Best Arabidopsis Sequence Match ( AT2G25800.1 )
(BLAST)

001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL

Arabidopsis Description

Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.