Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU80385 | Sorghum | cytosol | 78.34 | 87.59 |
| Zm00001d020178_P002 | Maize | plastid | 65.09 | 61.51 |
| Zm00001d005638_P001 | Maize | plastid | 64.66 | 61.1 |
| HORVU4Hr1G057790.4 | Barley | plastid | 64.33 | 60.61 |
| TraesCS4D01G200800.1 | Wheat | plastid | 64.12 | 60.1 |
| TraesCS4B01G199800.1 | Wheat | plastid | 64.01 | 59.94 |
| TraesCS4A01G104100.2 | Wheat | cytosol | 64.33 | 59.58 |
| Os08t0390100-01 | Rice | cytosol, plastid | 43.0 | 59.29 |
| GSMUA_Achr3P16260_001 | Banana | cytosol, mitochondrion | 55.5 | 58.26 |
| GSMUA_Achr6P26320_001 | Banana | cytosol | 54.09 | 57.37 |
| GSMUA_Achr4P08290_001 | Banana | cytosol | 48.81 | 56.84 |
| VIT_11s0016g03330.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 49.68 | 55.14 |
| KRH62073 | Soybean | cytosol, peroxisome | 30.06 | 53.14 |
| GSMUA_Achr4P15490_001 | Banana | golgi, plasma membrane | 51.94 | 51.06 |
| VIT_04s0008g03350.t01 | Wine grape | mitochondrion | 54.74 | 50.35 |
| Solyc08g066600.2.1 | Tomato | cytosol, mitochondrion, plastid | 53.66 | 49.9 |
| PGSC0003DMT400005705 | Potato | mitochondrion | 53.23 | 49.4 |
| AT2G20010.2 | Thale cress | nucleus | 50.43 | 49.16 |
| KRH52752 | Soybean | nucleus | 53.23 | 49.11 |
| CDY40469 | Canola | cytosol | 50.22 | 49.0 |
| Bra039035.1-P | Field mustard | cytosol | 50.22 | 48.95 |
| CDY35919 | Canola | cytosol | 50.0 | 48.74 |
| AT2G25800.1 | Thale cress | plastid | 51.83 | 48.73 |
| KRH07260 | Soybean | cytosol | 49.89 | 48.69 |
| CDY35337 | Canola | cytosol | 51.51 | 48.68 |
| KRH74278 | Soybean | cytosol | 50.22 | 48.64 |
| Bra034270.1-P | Field mustard | cytosol | 51.72 | 48.34 |
| CDX77008 | Canola | cytosol | 51.4 | 48.13 |
| KRH60226 | Soybean | cytosol | 29.31 | 47.8 |
| PGSC0003DMT400070575 | Potato | cytosol | 48.6 | 47.42 |
| Solyc05g018180.2.1 | Tomato | cytosol, nucleus | 48.38 | 47.06 |
| KRH62072 | Soybean | cytosol, mitochondrion, nucleus | 22.95 | 46.2 |
| KRH60225 | Soybean | cytosol | 18.32 | 45.33 |
| KRH41514 | Soybean | cytosol | 37.72 | 44.42 |
| Solyc05g041240.1.1 | Tomato | endoplasmic reticulum, golgi | 13.25 | 37.96 |
| Zm00001d027590_P001 | Maize | mitochondrion | 34.7 | 30.78 |
| Zm00001d032737_P001 | Maize | cytosol | 32.76 | 30.37 |
| Zm00001d010939_P004 | Maize | mitochondrion | 32.0 | 29.35 |
| Zm00001d037867_P001 | Maize | cytosol | 27.16 | 21.56 |
| Zm00001d002640_P002 | Maize | cytosol | 22.2 | 18.04 |
Protein Annotations
| EnsemblPlants:Zm00001d032274_P001 | EnsemblPlants:Zm00001d032274_T001 | EnsemblPlantsGene:Zm00001d032274 | EntrezGene:103643310 | InterPro:DUF810 | InterPro:IPR014770 |
| InterPro:IPR014772 | InterPro:Munc13_1 | InterPro:Munc13_dom-2 | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF4 | PFAM:PF05664 |
| PFscan:PS51258 | PFscan:PS51259 | ProteinID:ONM04747.1 | SEG:seg | UniParc:UPI0004DE99F9 | UniProt:A0A1D6KPL6 |
| MapMan:35.1 | : | : | : | : | : |
Description
Retinol dehydrogenase 13
Coordinates
chr1:-:219947690..219952769
Molecular Weight (calculated)
103825.0 Da
IEP (calculated)
7.143
GRAVY (calculated)
-0.164
Length
928 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMTRHFRD SSTSSDPAAA TPPLPPPLPD LGVALSAADL RVTAYELLVA ASRATGAKPL TYIPQPTTAA SKLKGAFGLG SSPPSKVGRA AVLELVRVRM
101: GVTEQADATI RRLLLRVAAG QLGRPAESMV LPLEFLQKCK ASDFPDPLEY EAWQMRNFKL LEAGVLVHPL IPLKKSDIPA KRMQRIIHKA YVGQVEAGRN
201: SESMQILHNT VMSLACRSLC ETSNECHWAD GFPFNLHIYK MLVEACFDVE EGTVVDEIDE MMELLKKTWP VFGVTQMLHN LYFTWVLFNH FVILGQEDNG
301: LFSAIENLLV EVAKDAKITK DPDYCDVLSS TLISIMGWEE KRLLAYHETF GGSNLYSMQY TISIGISAAK ILFEDVSYEY HSGTNRDIDV VRSRIETYIK
401: SSIRTTFAQK MKEAGSNRSS RNRTPVLSIL AKKTTELAIK EKNVYSPILK KWHPFAAGVA VATLHGCFGN ELKKFIVGLT ELTPDTAQVL KAADKLEKDL
501: VHIAIEDSMD VGDSGKSLIS QMPRYEAGTV MDNLVKSWAK EQLDRLKIWT DQKLQQQTWN PEDKDKDNFA HSSVEMLHRI EETMDAFVRL SIPIRSTLLA
601: DLTAGLDKCL HYYVSNVKSG CGTRSSLFPQ LPHLTRCDVG SKLFKKNEKP QFLMKRGSQV GSTTGNEASS LRGLCFRINT IYYIQTELEN LHMKTKECLQ
701: KVELFQPDNA DDLNINFGLS QAACQEGIRQ LCETTAYMVM FNDLSHVLLN TLYVGSPASN RILPLLKELG PILRIISDTV HNEVQNRLIT ALMKASFDGF
801: LLVLLAGGPT RAFSCQDYQV IEDDFRALRG LYLSYCDGLP EELVGKASSE VKNILPLLRT DTETLIERFK QLISESYEPT TASRFPMPPV PARWSPDNPN
901: TILRVLCYRN DEIATKFLKK TYDLPKTL
101: GVTEQADATI RRLLLRVAAG QLGRPAESMV LPLEFLQKCK ASDFPDPLEY EAWQMRNFKL LEAGVLVHPL IPLKKSDIPA KRMQRIIHKA YVGQVEAGRN
201: SESMQILHNT VMSLACRSLC ETSNECHWAD GFPFNLHIYK MLVEACFDVE EGTVVDEIDE MMELLKKTWP VFGVTQMLHN LYFTWVLFNH FVILGQEDNG
301: LFSAIENLLV EVAKDAKITK DPDYCDVLSS TLISIMGWEE KRLLAYHETF GGSNLYSMQY TISIGISAAK ILFEDVSYEY HSGTNRDIDV VRSRIETYIK
401: SSIRTTFAQK MKEAGSNRSS RNRTPVLSIL AKKTTELAIK EKNVYSPILK KWHPFAAGVA VATLHGCFGN ELKKFIVGLT ELTPDTAQVL KAADKLEKDL
501: VHIAIEDSMD VGDSGKSLIS QMPRYEAGTV MDNLVKSWAK EQLDRLKIWT DQKLQQQTWN PEDKDKDNFA HSSVEMLHRI EETMDAFVRL SIPIRSTLLA
601: DLTAGLDKCL HYYVSNVKSG CGTRSSLFPQ LPHLTRCDVG SKLFKKNEKP QFLMKRGSQV GSTTGNEASS LRGLCFRINT IYYIQTELEN LHMKTKECLQ
701: KVELFQPDNA DDLNINFGLS QAACQEGIRQ LCETTAYMVM FNDLSHVLLN TLYVGSPASN RILPLLKELG PILRIISDTV HNEVQNRLIT ALMKASFDGF
801: LLVLLAGGPT RAFSCQDYQV IEDDFRALRG LYLSYCDGLP EELVGKASSE VKNILPLLRT DTETLIERFK QLISESYEPT TASRFPMPPV PARWSPDNPN
901: TILRVLCYRN DEIATKFLKK TYDLPKTL
0001: MVRHSRRESF FDMVGFEVCP DTDLLWPFGK LDGLDRDEIR ETAYEIFFAA CRSSPGFGGR NALTFYSKHN AGDHQGDGIG GGGGSGSSNG SGFGSLGRKE
0101: VLTTPTSRVK RALGLKMLKR SPSRRMSTVG TVVGAVSAPS SPGNNGSIGS GSGHFSPGAG FFTVPPARPR RPLTSAEIMR QQMKVTEQSD TRLRKTLMRT
0201: LVGQTGRRAE TIILPLELLR HVKPSEFGDV HEYQIWQRRQ LKVLEAGLLI HPSIPLEKTN NFAMRLREII RQSETKAIDT SKNSDIMPTL CNLVASLSWR
0301: NATPTTDICH WADGYPLNIH LYVALLQSIF DIRDETLVLD EIDELLELMK KTWIMLGITR AIHNLCFTWV LFHQYIVTSQ MEPDLLGASH AMLAEVANDA
0401: KKSDREALYV KLLTSTLASM QGWTEKRLLS YHDYFQRGNV GLIENLLPLA LSSSKILGED VTISQMNGLE KGDVKLVDSS GDRVDYYIRA SIKNAFSKVI
0501: ENMKAEIEET EEGEEEAATM LLRLAKETED LALRESECFS PILKRWHLVA AGVASVSLHQ CYGSILMQYL AGRSTITKET VEVLQTAGKL EKVLVQMVAE
0601: NSDECEDGGK GLVREMVPYE VDSIILRLLR QWIEEKLQTV QECLSRAKEA ETWNPKSKSE PYAQSAGELM KLANDAIEEF FEIPIGITED LVHDLAEGLE
0701: KLFQEYTTFV ASCGSKQSYI PTLPPLTRCN RDSKFVKLWK KATPCAASGE ELNQMGEAPG GNHPRPSTSR GTQRLYIRLN TLHFLSSQLH SLNKSLSLNP
0801: RVLPATRKRC RERTKSSSYF EFTQAGIESA CQHVSEVAAY RLIFLDSYSV FYESLYPGDV ANGRIKPALR ILKQNLTLMT AILADKAQAL AMKEVMKASF
0901: EVVLTVLLAG GHSRVFCRTD HDLIEEDFES LKKVYCTCGE GLIPEEVVDR EAETVEGVIQ LMGQPTEQLM EDFSIVTCES SGMGLVGTGQ KLPMPPTTGR
1001: WNRSDPNTIL RVLCYRDDRV ANQFLKKSFQ LGKRR
0101: VLTTPTSRVK RALGLKMLKR SPSRRMSTVG TVVGAVSAPS SPGNNGSIGS GSGHFSPGAG FFTVPPARPR RPLTSAEIMR QQMKVTEQSD TRLRKTLMRT
0201: LVGQTGRRAE TIILPLELLR HVKPSEFGDV HEYQIWQRRQ LKVLEAGLLI HPSIPLEKTN NFAMRLREII RQSETKAIDT SKNSDIMPTL CNLVASLSWR
0301: NATPTTDICH WADGYPLNIH LYVALLQSIF DIRDETLVLD EIDELLELMK KTWIMLGITR AIHNLCFTWV LFHQYIVTSQ MEPDLLGASH AMLAEVANDA
0401: KKSDREALYV KLLTSTLASM QGWTEKRLLS YHDYFQRGNV GLIENLLPLA LSSSKILGED VTISQMNGLE KGDVKLVDSS GDRVDYYIRA SIKNAFSKVI
0501: ENMKAEIEET EEGEEEAATM LLRLAKETED LALRESECFS PILKRWHLVA AGVASVSLHQ CYGSILMQYL AGRSTITKET VEVLQTAGKL EKVLVQMVAE
0601: NSDECEDGGK GLVREMVPYE VDSIILRLLR QWIEEKLQTV QECLSRAKEA ETWNPKSKSE PYAQSAGELM KLANDAIEEF FEIPIGITED LVHDLAEGLE
0701: KLFQEYTTFV ASCGSKQSYI PTLPPLTRCN RDSKFVKLWK KATPCAASGE ELNQMGEAPG GNHPRPSTSR GTQRLYIRLN TLHFLSSQLH SLNKSLSLNP
0801: RVLPATRKRC RERTKSSSYF EFTQAGIESA CQHVSEVAAY RLIFLDSYSV FYESLYPGDV ANGRIKPALR ILKQNLTLMT AILADKAQAL AMKEVMKASF
0901: EVVLTVLLAG GHSRVFCRTD HDLIEEDFES LKKVYCTCGE GLIPEEVVDR EAETVEGVIQ LMGQPTEQLM EDFSIVTCES SGMGLVGTGQ KLPMPPTTGR
1001: WNRSDPNTIL RVLCYRDDRV ANQFLKKSFQ LGKRR
Arabidopsis Description
F19P19.6 protein [Source:UniProtKB/TrEMBL;Acc:P93812]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.