Subcellular Localization
min:
: max
Winner_takes_all: nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400070575 | Potato | cytosol | 95.91 | 96.21 |
| VIT_11s0016g03330.t01 | Wine grape | cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole | 59.64 | 68.06 |
| KRH74278 | Soybean | cytosol | 60.48 | 60.23 |
| KRH07260 | Soybean | cytosol | 59.96 | 60.15 |
| KRH60225 | Soybean | cytosol | 23.38 | 59.47 |
| GSMUA_Achr4P08290_001 | Banana | cytosol | 48.32 | 57.84 |
| KRH41514 | Soybean | cytosol | 47.69 | 57.74 |
| KRH60226 | Soybean | cytosol | 34.38 | 57.65 |
| Solyc08g066600.2.1 | Tomato | cytosol, mitochondrion, plastid | 59.96 | 57.31 |
| AT2G20010.2 | Thale cress | nucleus | 57.13 | 57.25 |
| GSMUA_Achr3P16260_001 | Banana | cytosol, mitochondrion | 52.83 | 57.01 |
| Bra039035.1-P | Field mustard | cytosol | 56.81 | 56.93 |
| CDY35919 | Canola | cytosol | 56.71 | 56.83 |
| CDY40469 | Canola | cytosol | 56.5 | 56.68 |
| GSMUA_Achr6P26320_001 | Banana | cytosol | 51.68 | 56.34 |
| Zm00001d020178_P002 | Maize | plastid | 55.77 | 54.18 |
| Zm00001d005638_P001 | Maize | plastid | 55.56 | 53.97 |
| Os09t0346700-01 | Rice | plasma membrane | 55.66 | 53.91 |
| EER98780 | Sorghum | plastid | 55.45 | 53.54 |
| TraesCS5A01G187000.1 | Wheat | mitochondrion, plastid | 54.19 | 52.81 |
| TraesCS5B01G185400.1 | Wheat | mitochondrion, plastid | 54.09 | 52.71 |
| TraesCS5D01G192300.1 | Wheat | mitochondrion, plastid | 53.88 | 52.5 |
| OQU80385 | Sorghum | cytosol | 43.4 | 49.88 |
| GSMUA_Achr4P15490_001 | Banana | golgi, plasma membrane | 49.06 | 49.58 |
| HORVU5Hr1G041860.5 | Barley | plastid | 50.63 | 49.14 |
| Zm00001d032274_P001 | Maize | plastid | 47.06 | 48.38 |
| Os08t0390100-01 | Rice | cytosol, plastid | 34.07 | 48.29 |
| HORVU4Hr1G057790.4 | Barley | plastid | 48.95 | 47.41 |
| TraesCS4D01G200800.1 | Wheat | plastid | 48.53 | 46.77 |
| TraesCS4B01G199800.1 | Wheat | plastid | 48.53 | 46.72 |
| TraesCS4A01G104100.2 | Wheat | cytosol | 48.53 | 46.21 |
| Solyc05g041240.1.1 | Tomato | endoplasmic reticulum, golgi | 12.58 | 37.04 |
| Solyc09g090480.2.1 | Tomato | cytosol | 37.63 | 35.23 |
| Solyc03g005630.2.1 | Tomato | cytosol | 36.48 | 33.98 |
| Solyc01g096540.2.1 | Tomato | cytosol, plastid | 27.99 | 24.05 |
| Solyc08g080520.2.1 | Tomato | cytosol | 25.16 | 21.05 |
| Solyc02g071830.1.1 | Tomato | endoplasmic reticulum, extracellular | 5.03 | 13.37 |
Protein Annotations
| EnsemblPlants:Solyc05g018180.2.1 | EnsemblPlantsGene:Solyc05g018180.2 | InterPro:DUF810 | InterPro:IPR014770 | InterPro:IPR014772 | InterPro:Munc13_1 |
| InterPro:Munc13_dom-2 | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF15 | PFAM:PF05664 | PFscan:PS51258 | PFscan:PS51259 |
| SEG:seg | UniParc:UPI00027671FC | UniProt:K4BZ73 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5:-:20178597..20183914
Molecular Weight (calculated)
107027.0 Da
IEP (calculated)
7.397
GRAVY (calculated)
-0.144
Length
954 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMVSYAYRD AAAQTVSTKK VAISPSDELT YPFGELAVDF TQSELREAAY EILVGACRSF NSGKTLKYVS SSVKSSTSSS SSKAASKVKK ALGLKKNLES
101: VSGKKASTVG VAELMRVQMG ISEPTDTRVR RAFLRVAAGQ LGRRLESMVL PLELLQQFKI SDFPNPQEYE VWQRRNLKLL EAGLVLHPCL PLDEIDTRPK
201: QLQQIIRGAL VKPMETTKHS ESMLELRNLS TSLACRSFDG SSPEICHWAD GTPLNLRLYQ ILLEACFDVN DKISVIEEVD EVLEIIKKTW VVLGIDQMFH
301: NICFSWVLFH RYVATSQVQK ELLFASDNLL SDVAKDSKTV KYPTCSQTLS SLLGLIVGWA EKRLLVYHDS FYRDNIDSMQ SLLSLSLSAT EILVEHSSGN
401: YHKRSKEVDV AFSRVDSYIR ASMLHTFSQG KERLISSRKS SKQQHNPLPI LSILAQNVSD LAFNEKEIYS AVLKRWHPLA TGVAVATLHA CYGNELKKFV
501: SGISELTPDA VQVLIAADKL EKDLVQMAVV DAVDSEDGGK SLMTEMIPYE AEAVIANLVK SWISTRLDRL KEWVTRNLQQ EIWNPRANKE RVAPSGVEVL
601: RSIDETFEAF FLLPIPMHPD LLPELMNGLD RCLQNYILKA ISGCGSRSAF VPTMPALTRC STGSKFRVFR KKERSPMVPY RKSQSGTTNG DDSFSIPQLC
701: VRINTLHSIR KELDVLEKRT ISQLRDNTRV HDDNIVDGLG KCFELSVASC LEGIQQLSEA ISYKIIFHEL RHIFWDYLYV ADVSSSRIEP FLQELENNLE
801: IISATVHDRV RTRAITNVMK ASFDGFLLIL LAGGPCRAFS LADAAIIDED LKFLMDLFWS DGDGLPTDLI DKYSATLKGI LPLFHTDTAI LIEQLEHATE
901: DNFGTSAKSR LPLPPTSGNW SPTELSTIMR VLCYRNDKIA SKFLKKKYNL PKKL
101: VSGKKASTVG VAELMRVQMG ISEPTDTRVR RAFLRVAAGQ LGRRLESMVL PLELLQQFKI SDFPNPQEYE VWQRRNLKLL EAGLVLHPCL PLDEIDTRPK
201: QLQQIIRGAL VKPMETTKHS ESMLELRNLS TSLACRSFDG SSPEICHWAD GTPLNLRLYQ ILLEACFDVN DKISVIEEVD EVLEIIKKTW VVLGIDQMFH
301: NICFSWVLFH RYVATSQVQK ELLFASDNLL SDVAKDSKTV KYPTCSQTLS SLLGLIVGWA EKRLLVYHDS FYRDNIDSMQ SLLSLSLSAT EILVEHSSGN
401: YHKRSKEVDV AFSRVDSYIR ASMLHTFSQG KERLISSRKS SKQQHNPLPI LSILAQNVSD LAFNEKEIYS AVLKRWHPLA TGVAVATLHA CYGNELKKFV
501: SGISELTPDA VQVLIAADKL EKDLVQMAVV DAVDSEDGGK SLMTEMIPYE AEAVIANLVK SWISTRLDRL KEWVTRNLQQ EIWNPRANKE RVAPSGVEVL
601: RSIDETFEAF FLLPIPMHPD LLPELMNGLD RCLQNYILKA ISGCGSRSAF VPTMPALTRC STGSKFRVFR KKERSPMVPY RKSQSGTTNG DDSFSIPQLC
701: VRINTLHSIR KELDVLEKRT ISQLRDNTRV HDDNIVDGLG KCFELSVASC LEGIQQLSEA ISYKIIFHEL RHIFWDYLYV ADVSSSRIEP FLQELENNLE
801: IISATVHDRV RTRAITNVMK ASFDGFLLIL LAGGPCRAFS LADAAIIDED LKFLMDLFWS DGDGLPTDLI DKYSATLKGI LPLFHTDTAI LIEQLEHATE
901: DNFGTSAKSR LPLPPTSGNW SPTELSTIMR VLCYRNDKIA SKFLKKKYNL PKKL
001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL
Arabidopsis Description
Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.