Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plastid:
22908117
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc02g011700.1.1 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06970.1 | Solyc02g011700.1.1 | AT2G18960.1 | 24163289 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH13324 | Soybean | cytosol | 8.92 | 75.57 |
| VIT_13s0084g00630.t01 | Wine grape | cytosol | 74.23 | 73.18 |
| KRH20669 | Soybean | endoplasmic reticulum | 70.27 | 70.78 |
| KRH13315 | Soybean | cytosol, endoplasmic reticulum, nucleus | 70.18 | 70.56 |
| AT5G06970.1 | Thale cress | cytosol | 69.28 | 69.85 |
| CDX69997 | Canola | cytosol, peroxisome, plastid | 67.39 | 69.32 |
| Bra009303.1-P | Field mustard | cytosol, peroxisome, plastid | 67.12 | 69.17 |
| CDX99020 | Canola | cytosol, peroxisome, plastid | 67.21 | 68.63 |
| GSMUA_Achr2P01130_001 | Banana | extracellular, golgi | 19.28 | 66.67 |
| Os03t0683700-02 | Rice | plasma membrane | 15.5 | 66.15 |
| KXG21868 | Sorghum | cytosol | 65.32 | 65.55 |
| TraesCS2D01G215400.1 | Wheat | nucleus | 64.86 | 65.04 |
| HORVU2Hr1G041780.2 | Barley | cytosol | 31.44 | 64.87 |
| TraesCS1A01G052200.3 | Wheat | cytosol, mitochondrion, nucleus | 64.59 | 64.83 |
| GSMUA_Achr2P01140_001 | Banana | cytosol | 47.21 | 64.37 |
| TraesCS1B01G069300.2 | Wheat | nucleus | 64.41 | 63.56 |
| HORVU2Hr1G041800.16 | Barley | cytosol | 24.59 | 63.05 |
| Zm00001d037867_P001 | Maize | cytosol | 64.68 | 61.42 |
| Solyc02g071830.1.1 | Tomato | endoplasmic reticulum, extracellular | 14.23 | 44.01 |
| Solyc08g080520.2.1 | Tomato | cytosol | 34.95 | 34.04 |
| Solyc08g066600.2.1 | Tomato | cytosol, mitochondrion, plastid | 25.68 | 28.56 |
| Solyc05g018180.2.1 | Tomato | cytosol, nucleus | 24.05 | 27.99 |
| Solyc03g005630.2.1 | Tomato | cytosol | 23.87 | 25.88 |
| Solyc09g090480.2.1 | Tomato | cytosol | 23.42 | 25.52 |
| Solyc05g041240.1.1 | Tomato | endoplasmic reticulum, golgi | 5.77 | 19.75 |
Protein Annotations
| EnsemblPlants:Solyc01g096540.2.1 | EnsemblPlantsGene:Solyc01g096540.2 | InterPro:DUF810 | InterPro:IPR014770 | InterPro:IPR014772 | InterPro:Munc13_1 |
| InterPro:Munc13_dom-2 | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF2 | PFAM:PF05664 | PFscan:PS51258 | PFscan:PS51259 |
| SEG:seg | UniParc:UPI0002767A6E | UniProt:K4B042 | MapMan:21.1.1.3.2 | : | : |
Description
No Description!
Coordinates
chr1:-:87609199..87629113
Molecular Weight (calculated)
125391.0 Da
IEP (calculated)
5.410
GRAVY (calculated)
-0.268
Length
1110 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEEENSIELL QRFRRDRRIL LNFILSGSLI KKVAMPPGAV SLEDVDLDQV SVDFVLNCAR KGGLLELSEA IRDYHDSTLF PHMSNAGSTD EFFLATNPEQ
0101: SGLPPRRLPP PVPISTPSPI LPTLSTSESI DTEPFEELSS LSKSQSLSST QQQELTVDDI EDFDDDDDLD EVDSRRYSRR VLNDAADLML GLPSFATAIG
0201: DDDLRETAYE ILLAAAGASG GLIVPSKDKK KEKKSRLMRK LGRSKSENVM TQSQHLSGLV SLLETMRVQM EISEAMDVRT RLGLLNAMVG KVGKRMDTIL
0301: IPLELLCCIS RSEFSDKKSY FKWQKRQLNM LEEGLINHPA VGFGESGRKA NELRVLLAKI EESESFPPPA AEMQRTECLK SLREIAMPLA ERPARGDLTG
0401: EVCHWADGYH LNVKLYEKLL LSIFDVLDEG KLTEEVEEIL ELLKSTWRIL GITETIHYTC YAWVLFRQFV ITGEQRILQY VIEQLKKIPL KEQRGPQERM
0501: HLKSLHSRVE MEKGFQELTF LQSFLLPISK WADKQLGDYH LNYAEGLMMM ENTVAVAMLV RRLLLEEPET AMESATISDK EQIEFYVTSS IKNAFTRIIQ
0601: DVEAISQATN EHPLALLAEH TKKLLQRDNT IYMPILSQRH QNAAAVSAST LHKLYGIKLR PFLDNAEHLT EDTIAVFPAA YSLEHDIMQV IVSSCADGTS
0701: DAYCRKLNLF KIETASGTLV LRWVNSQLAR ILNWVDRAIQ QERWVPVSPQ QRHGSSIVEV YRIVEETVDQ FFSLEVPMRP GELGSLFRGI DNAFQVYAKT
0801: ILDKIANKED IVPPVPILTR YSRESGIKAF VKKELKDTRI PDVLKSIEID VAATSTLCVQ LNSLHYAISQ LNKLEDSIWA RWTRKKHHDK LTKNPAEETA
0901: KGFQKKDSFD GSRKDINAAI DRMCEFTGTK IIFCDLREPF IENLYKPSVS QSRLESVMEP LDMVLNQLCD VIMEPLRDRV VTGLLQASLD GLVRVILDGG
1001: PSRVFSLGDA KLLEEDLEIL KEFFISGGDG LPRGVVENQV ARVRQVIKLQ GYETREIIED LRSASELEMQ GGRGKLGADT KTLLRILCHR GESEASQFVK
1101: KQFKIPKSGA
0101: SGLPPRRLPP PVPISTPSPI LPTLSTSESI DTEPFEELSS LSKSQSLSST QQQELTVDDI EDFDDDDDLD EVDSRRYSRR VLNDAADLML GLPSFATAIG
0201: DDDLRETAYE ILLAAAGASG GLIVPSKDKK KEKKSRLMRK LGRSKSENVM TQSQHLSGLV SLLETMRVQM EISEAMDVRT RLGLLNAMVG KVGKRMDTIL
0301: IPLELLCCIS RSEFSDKKSY FKWQKRQLNM LEEGLINHPA VGFGESGRKA NELRVLLAKI EESESFPPPA AEMQRTECLK SLREIAMPLA ERPARGDLTG
0401: EVCHWADGYH LNVKLYEKLL LSIFDVLDEG KLTEEVEEIL ELLKSTWRIL GITETIHYTC YAWVLFRQFV ITGEQRILQY VIEQLKKIPL KEQRGPQERM
0501: HLKSLHSRVE MEKGFQELTF LQSFLLPISK WADKQLGDYH LNYAEGLMMM ENTVAVAMLV RRLLLEEPET AMESATISDK EQIEFYVTSS IKNAFTRIIQ
0601: DVEAISQATN EHPLALLAEH TKKLLQRDNT IYMPILSQRH QNAAAVSAST LHKLYGIKLR PFLDNAEHLT EDTIAVFPAA YSLEHDIMQV IVSSCADGTS
0701: DAYCRKLNLF KIETASGTLV LRWVNSQLAR ILNWVDRAIQ QERWVPVSPQ QRHGSSIVEV YRIVEETVDQ FFSLEVPMRP GELGSLFRGI DNAFQVYAKT
0801: ILDKIANKED IVPPVPILTR YSRESGIKAF VKKELKDTRI PDVLKSIEID VAATSTLCVQ LNSLHYAISQ LNKLEDSIWA RWTRKKHHDK LTKNPAEETA
0901: KGFQKKDSFD GSRKDINAAI DRMCEFTGTK IIFCDLREPF IENLYKPSVS QSRLESVMEP LDMVLNQLCD VIMEPLRDRV VTGLLQASLD GLVRVILDGG
1001: PSRVFSLGDA KLLEEDLEIL KEFFISGGDG LPRGVVENQV ARVRQVIKLQ GYETREIIED LRSASELEMQ GGRGKLGADT KTLLRILCHR GESEASQFVK
1101: KQFKIPKSGA
0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
Arabidopsis Description
PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.