Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G502400.1 | plasma membrane |
| TraesCS2B01G530500.1 | plasma membrane |
| TraesCS2D01G503000.1 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06970.1 | TraesCS2A01G502400.1 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | TraesCS2B01G530500.1 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | TraesCS2D01G503000.1 | AT2G18960.1 | 24163289 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G041800.16 | Barley | cytosol | 38.57 | 98.61 |
| TraesCS1A01G052200.3 | Wheat | cytosol, mitochondrion, nucleus | 98.37 | 98.46 |
| TraesCS1B01G069300.2 | Wheat | nucleus | 98.37 | 96.8 |
| HORVU2Hr1G041780.2 | Barley | cytosol | 46.16 | 94.98 |
| Os03t0683700-02 | Rice | plasma membrane | 20.96 | 89.23 |
| KXG21868 | Sorghum | cytosol | 87.9 | 87.97 |
| Zm00001d037867_P001 | Maize | cytosol | 87.17 | 82.55 |
| GSMUA_Achr2P01140_001 | Banana | cytosol | 51.76 | 70.39 |
| KRH13324 | Soybean | cytosol | 8.04 | 67.94 |
| VIT_13s0084g00630.t01 | Wine grape | cytosol | 67.21 | 66.07 |
| KRH20669 | Soybean | endoplasmic reticulum | 65.31 | 65.61 |
| KRH13315 | Soybean | cytosol, endoplasmic reticulum, nucleus | 65.4 | 65.58 |
| Solyc01g096540.2.1 | Tomato | cytosol, plastid | 65.04 | 64.86 |
| AT5G06970.1 | Thale cress | cytosol | 63.69 | 64.03 |
| Bra009303.1-P | Field mustard | cytosol, peroxisome, plastid | 61.88 | 63.6 |
| CDX69997 | Canola | cytosol, peroxisome, plastid | 61.88 | 63.48 |
| CDX99020 | Canola | cytosol, peroxisome, plastid | 61.97 | 63.11 |
| PGSC0003DMT400004282 | Potato | extracellular | 9.76 | 41.54 |
| Solyc02g071830.1.1 | Tomato | endoplasmic reticulum, extracellular | 10.66 | 32.87 |
| TraesCS2D01G398800.2 | Wheat | cytosol | 32.16 | 31.34 |
| TraesCS5D01G192300.1 | Wheat | mitochondrion, plastid | 24.93 | 28.19 |
| TraesCS1D01G147700.1 | Wheat | mitochondrion | 24.66 | 27.55 |
| TraesCS4D01G200800.1 | Wheat | plastid | 23.94 | 26.77 |
| TraesCS4D01G334500.1 | Wheat | mitochondrion | 24.84 | 26.73 |
Protein Annotations
| MapMan:21.1.1.3.2 | InterPro:DUF810 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010118 | GO:GO:0016020 |
| InterPro:IPR014770 | InterPro:IPR014772 | InterPro:Munc13_1 | InterPro:Munc13_dom-2 | PFAM:PF05664 | PFscan:PS51258 |
| PFscan:PS51259 | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF2 | EnsemblPlantsGene:TraesCS2D01G215400 | EnsemblPlants:TraesCS2D01G215400.1 | SEG:seg |
Description
No Description!
Coordinates
chr2D:+:178265626..178283603
Molecular Weight (calculated)
125070.0 Da
IEP (calculated)
5.641
GRAVY (calculated)
-0.319
Length
1107 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEENPVELL QRYRRDRHVL LNYILSGNLI KKVVMPPGAI SLDDVDIDQV SVDYVLNCAK KGDPLDLGDA IRLYHDSLDY PYVDNTGDVE GFYLVTRPEY
0101: SGSAPTREPP SVPATAPSPV VVPPPVVEQP QIAVPSSVTN LPKSLSLDSP TEKELTIDDI EDFEDDEGEF DSRRASRRHQ TDANDLSLRL PLFETGITDD
0201: DLREAAYEIL VAAAGASGGL IVPKKEKKKE KRHRLMRKLG RSKSESAESQ THRQPGLVGL LEILRAQLEI TESMDIRTRQ GLLNAMVGKV GKRMDNLLIP
0301: LELLCCISRA EFSDMKAYLR WQKRQLNMLE EGLINHPVVG FGELGRKVNE LRNLFRKIEE SESLSPSAAE VQRTECLRSL REVATSFSER PARGDLTGEV
0401: CHWADGYHLN AALYEKMLGS VFDTLDEGKL TEEVEEILEL LKSTWRILGI TEIIHDTCYA WVLFRQFVFT GEQGLLKVVI EHLRKIPLKE QRGPQERLHL
0501: KSLRSSVDAD DSCQDFTFFQ SFLSPVQKWV DKKLNDYHLH FSEGSSMMVD IVTVAMLTRR ILGEENDKAM ESPDRDQIDR YITSSVKSAF MKIVHSVEIK
0601: ADTSHEHVLA SLAEETKKLL KIETNIFSPV LSRWHPQAAV LSASLLHKLY GNKLGPFLEH AEHLTEDVVS VFPAADSLEQ YIMSVMASVV GDDGLDSLCR
0701: QKLVPYEIES KSGTVVLRWV NGQLERVETW VKRAAEQETW DPISPQQRHG GSIVEVYRII EETADQFFAF KVPMRIGELN SFCRGIDKAF QIYTQLVTQP
0801: IVDKEDLVPP VPVLTRYKKE LGIKAFVKKE IQEVRPVDER KSSEIVQLTM SKLCVRLNSL YYAISQLGKL EDSISERWAK RQSDKINIRR SMNGKSKSVV
0901: SNQKNQFDGS RKEINAAIDR VCEFTGLKVI FWDLQQPFID NMYKNSVSQA RLDTIVEVLD LVLAQLCDVI VEQLRDRVVT GLLQASLDGL VRVILDGGPT
1001: RVFSPNDAPL LEEDLEILKE FFISGGDGLP RGTVENLVSR VRPVINLIKQ ETRVLIDDLR EVTQGGKSKF GSDSKTLLRV LCHRNDSEAS HYVKKHFKIP
1101: SSAPPST
0101: SGSAPTREPP SVPATAPSPV VVPPPVVEQP QIAVPSSVTN LPKSLSLDSP TEKELTIDDI EDFEDDEGEF DSRRASRRHQ TDANDLSLRL PLFETGITDD
0201: DLREAAYEIL VAAAGASGGL IVPKKEKKKE KRHRLMRKLG RSKSESAESQ THRQPGLVGL LEILRAQLEI TESMDIRTRQ GLLNAMVGKV GKRMDNLLIP
0301: LELLCCISRA EFSDMKAYLR WQKRQLNMLE EGLINHPVVG FGELGRKVNE LRNLFRKIEE SESLSPSAAE VQRTECLRSL REVATSFSER PARGDLTGEV
0401: CHWADGYHLN AALYEKMLGS VFDTLDEGKL TEEVEEILEL LKSTWRILGI TEIIHDTCYA WVLFRQFVFT GEQGLLKVVI EHLRKIPLKE QRGPQERLHL
0501: KSLRSSVDAD DSCQDFTFFQ SFLSPVQKWV DKKLNDYHLH FSEGSSMMVD IVTVAMLTRR ILGEENDKAM ESPDRDQIDR YITSSVKSAF MKIVHSVEIK
0601: ADTSHEHVLA SLAEETKKLL KIETNIFSPV LSRWHPQAAV LSASLLHKLY GNKLGPFLEH AEHLTEDVVS VFPAADSLEQ YIMSVMASVV GDDGLDSLCR
0701: QKLVPYEIES KSGTVVLRWV NGQLERVETW VKRAAEQETW DPISPQQRHG GSIVEVYRII EETADQFFAF KVPMRIGELN SFCRGIDKAF QIYTQLVTQP
0801: IVDKEDLVPP VPVLTRYKKE LGIKAFVKKE IQEVRPVDER KSSEIVQLTM SKLCVRLNSL YYAISQLGKL EDSISERWAK RQSDKINIRR SMNGKSKSVV
0901: SNQKNQFDGS RKEINAAIDR VCEFTGLKVI FWDLQQPFID NMYKNSVSQA RLDTIVEVLD LVLAQLCDVI VEQLRDRVVT GLLQASLDGL VRVILDGGPT
1001: RVFSPNDAPL LEEDLEILKE FFISGGDGLP RGTVENLVSR VRPVINLIKQ ETRVLIDDLR EVTQGGKSKF GSDSKTLLRV LCHRNDSEAS HYVKKHFKIP
1101: SSAPPST
0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
Arabidopsis Description
PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.