Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS2A01G502400.1 | plasma membrane |
| TraesCS2B01G530500.1 | plasma membrane |
| TraesCS2D01G503000.1 | plasma membrane |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G06970.1 | TraesCS2A01G502400.1 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | TraesCS2B01G530500.1 | AT2G18960.1 | 24163289 |
| AT5G06970.1 | TraesCS2D01G503000.1 | AT2G18960.1 | 24163289 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G052200.3 | Wheat | cytosol, mitochondrion, nucleus | 97.33 | 99.01 |
| TraesCS2D01G215400.1 | Wheat | nucleus | 96.8 | 98.37 |
| HORVU2Hr1G041800.16 | Barley | cytosol | 37.78 | 98.15 |
| HORVU2Hr1G041780.2 | Barley | cytosol | 45.24 | 94.61 |
| Os03t0683700-02 | Rice | plasma membrane | 20.44 | 88.46 |
| KXG21868 | Sorghum | cytosol | 86.04 | 87.52 |
| Zm00001d037867_P001 | Maize | cytosol | 85.16 | 81.95 |
| GSMUA_Achr2P01140_001 | Banana | cytosol | 50.67 | 70.02 |
| KRH13324 | Soybean | cytosol | 7.91 | 67.94 |
| VIT_13s0084g00630.t01 | Wine grape | cytosol | 65.78 | 65.72 |
| KRH13315 | Soybean | cytosol, endoplasmic reticulum, nucleus | 63.64 | 64.86 |
| KRH20669 | Soybean | endoplasmic reticulum | 63.47 | 64.79 |
| Solyc01g096540.2.1 | Tomato | cytosol, plastid | 63.56 | 64.41 |
| AT5G06970.1 | Thale cress | cytosol | 62.4 | 63.76 |
| Bra009303.1-P | Field mustard | cytosol, peroxisome, plastid | 60.44 | 63.14 |
| CDX69997 | Canola | cytosol, peroxisome, plastid | 60.44 | 63.02 |
| CDX99020 | Canola | cytosol, peroxisome, plastid | 60.53 | 62.65 |
| PGSC0003DMT400004282 | Potato | extracellular | 9.6 | 41.54 |
| Solyc02g071830.1.1 | Tomato | endoplasmic reticulum, extracellular | 10.49 | 32.87 |
| TraesCS2B01G419500.1 | Wheat | cytosol, mitochondrion | 30.49 | 30.19 |
| TraesCS1B01G168300.2 | Wheat | cytosol | 24.36 | 28.07 |
| TraesCS5B01G185400.1 | Wheat | mitochondrion, plastid | 24.27 | 27.89 |
| TraesCS4B01G199800.1 | Wheat | plastid | 23.38 | 26.54 |
| TraesCS4B01G338200.1 | Wheat | mitochondrion | 24.18 | 26.54 |
Protein Annotations
| MapMan:21.1.1.3.2 | InterPro:DUF810 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005886 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 | GO:GO:0010118 | GO:GO:0016020 |
| InterPro:IPR014770 | InterPro:IPR014772 | InterPro:Munc13_1 | InterPro:Munc13_dom-2 | PFAM:PF05664 | PFscan:PS51258 |
| PFscan:PS51259 | PANTHER:PTHR31280 | PANTHER:PTHR31280:SF2 | EnsemblPlantsGene:TraesCS1B01G069300 | EnsemblPlants:TraesCS1B01G069300.2 | SEG:seg |
Description
No Description!
Coordinates
chr1B:+:54876190..54887687
Molecular Weight (calculated)
127114.0 Da
IEP (calculated)
5.578
GRAVY (calculated)
-0.317
Length
1125 amino acids
Sequence
(BLAST)
(BLAST)
0001: MDEENPVELL QRYRRDRHVL LNYILSGNLI KKVVMPPGAI SLDDVDIDQV SVDYVLNCAK KGDPLDLGDA IRLYHDSLDY PYVDNTGDVE GFYLLTRPEY
0101: SGSAPTREPP PVPAAAPLPV VVPPPVVEQP QIAVPSSVAN LPKSLSLDSP TEKELTIDDI EDFEDDEGEF DSRRASRRHQ TDANDISLRL PLFETGITDD
0201: DLRETAYEIL VAAAGASGGL IVPKKEKKKE KRHRLMRKLG RSKSESAESQ THRQPGLVGL LEILRAQLEI TESMDIRTRQ GLLNAMVGKV GKRMDNLLIP
0301: LELLCSISRA EFSDMKAYLR WQKRQLNMLE EGLINYPVVG FGELGRKVNE LRNLFRKIEE SESLSPSAAE VQRTECLRSL REVATSFSER PARGDLTGEV
0401: CHWADGYHLN AALYEKMLGS VFDTLDEGKL TEEVEEILEL LKSTWRILGI TETIHDTCYA WVLFRQFVFT GEQGLLKVVI EHLRKIPLKE QRGPQERLHL
0501: KSLRSSVDAD DSCQDFTFFQ SFLSPVQKWV DKKLNDYHLH FSEAMSDLLF TTECCNTYAH KGSSMMVDII TVAMLTRRIL GEENDKAMES PDRDQIDRYI
0601: TSSVKSAFMK IAHSVEIKAD TSHEHVLASL AEETKKLLKI ETNIFSPVLS RWHPQAAVLS ASLLHKLYGN KLGPFLEHSE HLTEDVVSVF PAADSLEQYI
0701: MSVMASVVGD DGLDSLCRQK LVPYEIESKS GTVVLRWVNG QLERVETWVK RAAEQETWDP ISPQQRHGGS IVEVYRIIEE TADQFFAFKV PMRIGELNSF
0801: CRGIDKAFQI YTQLVTQPIV DKEDLVPPVP VLTRYKKELG IKAFVKKEIQ EVRPVDERKS SEIVQLTMSK LCVRLNSLYY AISQLGKLED SISERWAKRQ
0901: SDKINIRRSM NGKSKGIVSN QKNQFDGSRK EINAAIDRVC ECTGLKVIFW DLQQPFIDNM YKNNVLQARL DTIVEVLDLV LAQLCDVIVE QLRDRVVTGL
1001: LQASLDGLVR VILDGGPTRV FSPNDAPLLE EDLEILKEFF ISGGDGLPRG TVENLVSRVR PVINLIKQET RVLIDDLREV TQGGKSKFGS DSKTLLRVLC
1101: HRNDSEASHY VKKHFKIPSS APPST
0101: SGSAPTREPP PVPAAAPLPV VVPPPVVEQP QIAVPSSVAN LPKSLSLDSP TEKELTIDDI EDFEDDEGEF DSRRASRRHQ TDANDISLRL PLFETGITDD
0201: DLRETAYEIL VAAAGASGGL IVPKKEKKKE KRHRLMRKLG RSKSESAESQ THRQPGLVGL LEILRAQLEI TESMDIRTRQ GLLNAMVGKV GKRMDNLLIP
0301: LELLCSISRA EFSDMKAYLR WQKRQLNMLE EGLINYPVVG FGELGRKVNE LRNLFRKIEE SESLSPSAAE VQRTECLRSL REVATSFSER PARGDLTGEV
0401: CHWADGYHLN AALYEKMLGS VFDTLDEGKL TEEVEEILEL LKSTWRILGI TETIHDTCYA WVLFRQFVFT GEQGLLKVVI EHLRKIPLKE QRGPQERLHL
0501: KSLRSSVDAD DSCQDFTFFQ SFLSPVQKWV DKKLNDYHLH FSEAMSDLLF TTECCNTYAH KGSSMMVDII TVAMLTRRIL GEENDKAMES PDRDQIDRYI
0601: TSSVKSAFMK IAHSVEIKAD TSHEHVLASL AEETKKLLKI ETNIFSPVLS RWHPQAAVLS ASLLHKLYGN KLGPFLEHSE HLTEDVVSVF PAADSLEQYI
0701: MSVMASVVGD DGLDSLCRQK LVPYEIESKS GTVVLRWVNG QLERVETWVK RAAEQETWDP ISPQQRHGGS IVEVYRIIEE TADQFFAFKV PMRIGELNSF
0801: CRGIDKAFQI YTQLVTQPIV DKEDLVPPVP VLTRYKKELG IKAFVKKEIQ EVRPVDERKS SEIVQLTMSK LCVRLNSLYY AISQLGKLED SISERWAKRQ
0901: SDKINIRRSM NGKSKGIVSN QKNQFDGSRK EINAAIDRVC ECTGLKVIFW DLQQPFIDNM YKNNVLQARL DTIVEVLDLV LAQLCDVIVE QLRDRVVTGL
1001: LQASLDGLVR VILDGGPTRV FSPNDAPLLE EDLEILKEFF ISGGDGLPRG TVENLVSRVR PVINLIKQET RVLIDDLREV TQGGKSKFGS DSKTLLRVLC
1101: HRNDSEASHY VKKHFKIPSS APPST
0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G
Arabidopsis Description
PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.