Factsheet for GSMUA_Achr2P01140_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr7P19560_001	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06970.1	GSMUA_Achr7P19560_001	AT2G18960.1	24163289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G041780.2	Barley	cytosol	44.96	68.03
TraesCS2D01G215400.1	Wheat	nucleus	70.39	51.76
KXG21868	Sorghum	cytosol	70.27	51.72
TraesCS1A01G052200.3	Wheat	cytosol, mitochondrion, nucleus	70.15	51.63
TraesCS1B01G069300.2	Wheat	nucleus	70.02	50.67
Zm00001d037867_P001	Maize	cytosol	69.78	48.59
AT5G06970.1	Thale cress	cytosol	65.11	48.14
VIT_13s0084g00630.t01	Wine grape	cytosol	66.34	47.96
Bra009303.1-P	Field mustard	cytosol, peroxisome, plastid	63.15	47.73
KRH20669	Soybean	endoplasmic reticulum	64.5	47.64
CDX69997	Canola	cytosol, peroxisome, plastid	63.02	47.54
KRH13315	Soybean	cytosol, endoplasmic reticulum, nucleus	64.25	47.37
Solyc01g096540.2.1	Tomato	cytosol, plastid	64.37	47.21
CDX99020	Canola	cytosol, peroxisome, plastid	63.02	47.19
PGSC0003DMT400004282	Potato	extracellular	11.67	36.54
Solyc02g071830.1.1	Tomato	endoplasmic reticulum, extracellular	13.64	30.92
HORVU2Hr1G041800.16	Barley	cytosol	13.88	26.1
GSMUA_Achr3P16260_001	Banana	cytosol, mitochondrion	25.31	23.3
GSMUA_Achr9P06130_001	Banana	nucleus	5.16	23.08
GSMUA_Achr4P08290_001	Banana	cytosol	22.24	22.71
GSMUA_Achr6P26320_001	Banana	cytosol	23.83	22.17
GSMUA_Achr11P...	Banana	cytosol	31.2	21.86
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	24.32	20.97
GSMUA_Achr1P03530_001	Banana	cytosol	21.74	20.0
GSMUA_Achr1P16870_001	Banana	cytosol	21.87	19.69
GSMUA_AchrUn_...	Banana	cytosol	20.15	18.74
GSMUA_Achr4P29190_001	Banana	cytosol	20.02	18.74
GSMUA_Achr1P10950_001	Banana	cytosol	20.27	17.7
KRH13324	Soybean	cytosol	0.98	6.11
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	1.84	4.67
Os03t0683700-02	Rice	plasma membrane	0.98	3.08

Protein Annotations

EnsemblPlants:GSMUA_Achr2P01140_001	EnsemblPlants:GSMUA_Achr2T01140_001	EnsemblPlantsGene:GSMUA_Achr2G01140_001	InterPro:DUF810	InterPro:IPR014770	InterPro:Munc13_1
ncoils:Coil	PANTHER:PTHR31280	PANTHER:PTHR31280:SF2	PFAM:PF05664	PFscan:PS51258	SEG:seg
UniParc:UPI0002958404	UniProt:M0S455	MapMan:21.1.1.3.2	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G01140_001]

Coordinates

chr2:-:6409203..6446418

Molecular Weight (calculated)

92729.1 Da

IEP (calculated)

5.142

GRAVY (calculated)

-0.279

Length

814 amino acids

Sequence
(BLAST)

001: MEEENVLELL QRYRRDRHIL LNYILSGSLI KKVVLPPGAI SLDDVDIDQV SVDYVLNCTK KGETLDLSEA IRLYHDSLDY PATSNIGPEK EFFLVTNPES
101: SGSPPSRAPP SIPVATSSCI VSNVSQPESF EPPHDQELTV DDIDDFEDDE EEEEVDSLRN SRPQPSDVGD ISPRLPLFAT GITDDDLRET AYEILVASAG
201: ASGGLIVPSK EKKKEKKSKL MRKLRHSKNE SIVSQSPLNL LSFIGLVFRV LKYISESMDI RTRQGLLNAL VGRVGKRMDH LLIPLELLCC VSKTEFSDKK
301: AFLRWQKRQL NMLEEGLINH PVVGFGESGR KANEFRNLLK KIEESESLPP SAAELQRTEC LRSVREIAMS LAERPARGDL TGEVCHWADG YPLNVRLYEK
401: MLSSVFDILD EGKLTQEVEE ILEFLKSTWR TLSITETIHD TCYAWVLFRQ FIITGEQKLL QFLIHHLRRI PLKEQRGPQE RLHLKSLCCS VESEDAWQNF
501: TFFKSFLFPI QKWADKKLAD YHLHFSEGPS MMSEIVTVGM LTRRILLEEN EQQVTDSMDQ DQIEIYISNS IKNAFARITH ATDVKSDTGP EHVLASLAEE
601: TKRLLKKDSN MFAPILSQWH PKAAVFSASL LHKFYGNKLR PFLDHAEHLT EDVVSVFPVA DSLEQYVMSV IASALGEDGL DDYCRKRLAL YQVEKISGTL
701: VLRWVNSQLD RIIGWVKRTV EQEGWEPISP QQRHGSSIVE VYRIIEETVD QFFALKVPMS VGELNSLCRG LDNAFQIYTQ GVTEKLGEFL LHTFLRENQI
801: DFICIALYLE HKLI

Best Arabidopsis Sequence Match ( AT5G06970.1 )
(BLAST)

0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G

Arabidopsis Description

PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.