Factsheet for GSMUA_Achr4P08290_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
extracellular 1
plastid 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0016g03330.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	67.5	64.35
KRH62073	Soybean	cytosol, peroxisome	41.78	63.43
GSMUA_Achr3P16260_001	Banana	cytosol, mitochondrion	67.63	60.97
GSMUA_Achr6P26320_001	Banana	cytosol	66.25	60.34
GSMUA_Achr9P06130_001	Banana	nucleus	13.68	59.89
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	69.51	58.69
Zm00001d020178_P002	Maize	plastid	69.64	56.52
Zm00001d005638_P001	Maize	plastid	69.51	56.42
Os09t0346700-01	Rice	plasma membrane	69.64	56.35
OQU80385	Sorghum	cytosol	58.59	56.27
EER98780	Sorghum	plastid	69.64	56.17
TraesCS5D01G192300.1	Wheat	mitochondrion, plastid	68.76	55.98
TraesCS5B01G185400.1	Wheat	mitochondrion, plastid	68.63	55.87
TraesCS5A01G187000.1	Wheat	mitochondrion, plastid	68.51	55.77
HORVU5Hr1G041860.5	Barley	plastid	68.13	55.24
VIT_04s0008g03350.t01	Wine grape	mitochondrion	67.13	53.02
PGSC0003DMT400005705	Potato	mitochondrion	65.87	52.5
Solyc08g066600.2.1	Tomato	cytosol, mitochondrion, plastid	65.62	52.4
CDY35337	Canola	cytosol	64.24	52.14
CDX77008	Canola	cytosol	64.12	51.56
Bra034270.1-P	Field mustard	cytosol	64.24	51.56
KRH52752	Soybean	nucleus	64.74	51.29
AT2G25800.1	Thale cress	plastid	63.49	51.27
KRH74278	Soybean	cytosol	61.48	51.15
KRH07260	Soybean	cytosol	59.85	50.16
KRH60225	Soybean	cytosol	23.59	50.13
AT2G20010.2	Thale cress	nucleus	58.47	48.95
Zm00001d032274_P001	Maize	plastid	56.84	48.81
HORVU4Hr1G057790.4	Barley	plastid	60.23	48.73
Bra039035.1-P	Field mustard	cytosol	57.84	48.42
CDY40469	Canola	cytosol	57.72	48.37
PGSC0003DMT400070575	Potato	cytosol	57.72	48.37
Solyc05g018180.2.1	Tomato	cytosol, nucleus	57.84	48.32
TraesCS4D01G200800.1	Wheat	plastid	59.97	48.28
CDY35919	Canola	cytosol	57.59	48.21
KRH41514	Soybean	cytosol	47.43	47.97
TraesCS4B01G199800.1	Wheat	plastid	59.6	47.93
TraesCS4A01G104100.2	Wheat	cytosol	59.97	47.7
Os08t0390100-01	Rice	cytosol, plastid	40.03	47.4
KRH60226	Soybean	cytosol	33.25	46.57
KRH62072	Soybean	cytosol, mitochondrion, nucleus	23.71	41.0
Solyc05g041240.1.1	Tomato	endoplasmic reticulum, golgi	14.3	35.19
GSMUA_Achr4P29190_001	Banana	cytosol	37.01	33.91
GSMUA_AchrUn_...	Banana	cytosol	36.51	33.26
GSMUA_Achr1P10950_001	Banana	cytosol	37.14	31.76
GSMUA_Achr1P16870_001	Banana	cytosol	35.63	31.42
GSMUA_Achr1P03530_001	Banana	cytosol	33.5	30.17
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	10.41	25.86
GSMUA_Achr2P01140_001	Banana	cytosol	22.71	22.24
GSMUA_Achr11P...	Banana	cytosol	26.6	18.24

Protein Annotations

EnsemblPlants:GSMUA_Achr4P08290_001	EnsemblPlants:GSMUA_Achr4T08290_001	EnsemblPlantsGene:GSMUA_Achr4G08290_001	InterPro:DUF810	InterPro:IPR014770	InterPro:IPR014772
InterPro:Munc13_1	InterPro:Munc13_dom-2	ncoils:Coil	PANTHER:PTHR31280	PANTHER:PTHR31280:SF15	PFAM:PF05664
PFscan:PS51258	PFscan:PS51259	SEG:seg	UniParc:UPI000294BB3F	UniProt:M0SM46	MapMan:35.1

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G08290_001]

Coordinates

chr4:-:6119646..6126188

Molecular Weight (calculated)

90193.6 Da

IEP (calculated)

8.063

GRAVY (calculated)

-0.273

Length

797 amino acids

Sequence
(BLAST)

001: MGISEQLDAR IRRGLLRIAA ANLGKRMESM VLPLELLQQF KSSDFPDQQE YIRWQTRNLK VLDAGLLRHP YLPLGKSDAA SQKLRQILHE ASKTPIETGK
101: NSEAMQVLRN AAMSLAYRSF NGFGSDTCHW ADGFPLNLYL YQMLLEACFN NSSEEASIID EIDEVLELIK KTWVFLGINE MFHNLCFAWI LFHRFDAKAT
201: QDPTYSKYLK SILSSIMSWT EKRLLAYHDM FSSSNIESMQ IIVSLGVTGA KIPVEDISNG YRRRRKEETD VACSRIDAYI RSSLRTAFAQ KMEHIASSRR
301: PSRKQSTPVL CILAQEIGNL ASKEQEMFSP ILKKWHPLAA GVAVATLHSC YGNELKQFIS SVTELTPDVV QVLRAADKLE KQLVNIAVED SVDSDDGGKS
401: LIREMPPYEA ESAIANLVRA WIRTRADRLK EWVDRNLQQE VWIPRATKES YAPSSVEVLR IIDETLDAYF RLPIPMHPAL LPDLLIGLDR NLQHYASKAK
501: AGCGSRNNFM PTLPALTRCE VGSKLWKKKD KSQNLTKRRS QVGSTNGDGS LSLSQLCVRI NSLYHIRKEL ENLEKKIKTC LRNTESAQAD VLNGMRTSFE
601: LSLAACQEGI LQVCETIAYK VVFHDLSHIL WDALFVGETA ASRIHPFLKE LDPTLEMVSS TVHNRVRYRV ITALMKASFD GFLLVLLAGG PSRGFSRQDS
701: HIIEDDFKSL KDLYLADGDG LPEELVEKAA REVNNVLPLF RTDTETLIER FKQMVVETND SAAKSKYPLP PNPGHWSPTE PNTVLHCTSR RRCCWFL

Best Arabidopsis Sequence Match ( AT2G25800.1 )
(BLAST)

001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL

Arabidopsis Description

Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.