Factsheet for VIT_04s0008g03350.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
plastid 2
extracellular 1
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62073	Soybean	cytosol, peroxisome	42.02	80.76
VIT_11s0016g03330.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	63.03	76.08
Solyc08g066600.2.1	Tomato	cytosol, mitochondrion, plastid	74.63	75.45
PGSC0003DMT400005705	Potato	mitochondrion	74.73	75.4
AT2G25800.1	Thale cress	plastid	73.44	75.08
KRH52752	Soybean	nucleus	74.73	74.95
CDX77008	Canola	cytosol	73.44	74.77
CDY35337	Canola	cytosol	72.75	74.75
Bra034270.1-P	Field mustard	cytosol	73.44	74.62
KRH62072	Soybean	cytosol, mitochondrion, nucleus	33.0	72.23
GSMUA_Achr3P16260_001	Banana	cytosol, mitochondrion	60.06	68.55
GSMUA_Achr6P26320_001	Banana	cytosol	59.27	68.34
GSMUA_Achr4P08290_001	Banana	cytosol	53.02	67.13
Os09t0346700-01	Rice	plasma membrane	62.74	64.26
Zm00001d020178_P002	Maize	plastid	62.24	63.95
Zm00001d005638_P001	Maize	plastid	62.14	63.85
EER98780	Sorghum	plastid	61.94	63.26
TraesCS5D01G192300.1	Wheat	mitochondrion, plastid	60.95	62.82
TraesCS5B01G185400.1	Wheat	mitochondrion, plastid	60.95	62.82
TraesCS5A01G187000.1	Wheat	mitochondrion, plastid	60.75	62.61
HORVU5Hr1G041860.5	Barley	plastid	56.49	57.99
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	54.21	57.94
OQU80385	Sorghum	cytosol	47.08	57.23
Os08t0390100-01	Rice	cytosol, plastid	38.16	57.21
HORVU4Hr1G057790.4	Barley	plastid	54.71	56.04
TraesCS4B01G199800.1	Wheat	plastid	54.31	55.3
TraesCS4D01G200800.1	Wheat	plastid	54.01	55.05
TraesCS4A01G104100.2	Wheat	cytosol	54.61	54.99
Zm00001d032274_P001	Maize	plastid	50.35	54.74
Solyc05g041240.1.1	Tomato	endoplasmic reticulum, golgi	15.56	48.46
VIT_05s0049g01560.t01	Wine grape	nucleus	41.13	40.69
VIT_13s0084g00630.t01	Wine grape	cytosol	29.44	26.38
VIT_02s0025g04160.t01	Wine grape	cytosol	24.88	21.79

Protein Annotations

ArrayExpress:VIT_04s0008g03350	EMBL:FN595231	EnsemblPlants:VIT_04s0008g03350.t01	EnsemblPlantsGene:VIT_04s0008g03350	InterPro:DUF810	InterPro:IPR014770
InterPro:IPR014772	InterPro:Munc13_1	InterPro:Munc13_dom-2	ncoils:Coil	PANTHER:PTHR31280	PANTHER:PTHR31280:SF15
PFAM:PF05664	PFscan:PS51258	PFscan:PS51259	ProteinID:CCB46698	ProteinID:CCB46698.1	SEG:seg
UniParc:UPI000210A95D	UniProt:F6H3D4	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4:-:2765920..2771847

Molecular Weight (calculated)

112681.0 Da

IEP (calculated)

8.061

GRAVY (calculated)

-0.286

Length

1009 amino acids

Sequence
(BLAST)

0001: MAHLFRDLSL GHSKRGTTAT VAATAVTATA MPVADLPSPF GQLTPTLTDS DLRLTAYEIF VSACRTSSGK PLSSISQADR SSSSSSPTPT PPISPSLQRS
0101: LTSTAASRVK KAFGLKYSPS SKKSPSGKDT SPAKAAKKPM TVGELMRFQM RVSEDTDSRI RRALLRIAAS QVGRRIESMV LPLELLQQFK SSDFTDQQEY
0201: EAWQKRNLKI LEAGLLLHPR LPLDKSNTAP QRLRQIIHGA LDRPMETGRN NESMQLLRNA VVSLACRSFD GSEACHWADG FPLNLRLYEM LLEACFDVNE
0301: ETSIIEEVDE LMEQIKKTWG ILGMNQMLHN ICFTWVLFHR FVTTGQVENY LLDAADNQLA EVAKDAKTTK DPEYPKILSS MLSSILGWAE KRLLAYHDTF
0401: DSANIDSMQN IVSLGVSAAK ILVEDISHEY RRRRKSEVDV ARNRIDTYIR SSLRTAFAQA SPYYLYCNGA GEHDCQLTNV MLVIMEKADS SRRASKNRPN
0501: SLPVLAILAK DVGELAVNEK VVFSPILKRW HPFSAGVAVA TLHACYGNEL KQFISGITEL TPDAVQVLRA ADKLEKDLVQ IAVEDSVDSE DGGKAIIREM
0601: PPFEAEAAIA NLVKAWVKTR VDRLKEWVDR NLQEEVWNPQ ANEEGYASSA VELMRIIDET LNAFFQLPIP MHPALLPDLM AGFDRCLQYY ITKAKSGCGS
0701: RNTFVPTMPA LTRCTTGSKF QGVWKKKEKS PHSQKRNSQV AVVNGDNSFG IPQLCVRINT MQRLRMELEV LEKRVITHLR NCESAHAEDL SNGLGKKFEL
0801: APAACLEGIQ QLSEALAYKI IFHDLSHVLW DGLYVGEPSS SRIEPLLQEL EQNLMIVSDN IHERVRTRAI TDIMRASFDG FLLVLLAGGP SRAFSRQDSQ
0901: IIEDDFKSLK DLFWSNGDGL PADLIDKFSG TVRGVLPLFR TDTESLIQRF RQVTLETYGP SARSRLPLPP TSGQWNSTEP NTLLRVLCYR NDEAASKFLK
1001: KTYNLPKKL

Best Arabidopsis Sequence Match ( AT2G25800.1 )
(BLAST)

001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL

Arabidopsis Description

Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.