Factsheet for GSMUA_Achr3P16260_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P26320_001	Banana	cytosol	82.58	83.43
GSMUA_Achr9P06130_001	Banana	nucleus	15.61	75.82
GSMUA_Achr4P08290_001	Banana	cytosol	60.97	67.63
Zm00001d020178_P002	Maize	plastid	73.3	65.99
Os09t0346700-01	Rice	plasma membrane	73.42	65.89
EER98780	Sorghum	plastid	73.53	65.79
Zm00001d005638_P001	Maize	plastid	72.96	65.68
VIT_11s0016g03330.t01	Wine grape	cytosol, endoplasmic reticulum, extracellular, golgi, mitochondrion, nucleus, plasma membrane, plastid, vacuole	61.99	65.55
TraesCS5D01G192300.1	Wheat	mitochondrion, plastid	71.83	64.86
TraesCS5B01G185400.1	Wheat	mitochondrion, plastid	71.61	64.66
TraesCS5A01G187000.1	Wheat	mitochondrion, plastid	71.38	64.45
GSMUA_Achr4P15490_001	Banana	golgi, plasma membrane	68.78	64.41
Os08t0390100-01	Rice	cytosol, plastid	45.93	60.33
VIT_04s0008g03350.t01	Wine grape	mitochondrion	68.55	60.06
AT2G25800.1	Thale cress	plastid	66.86	59.88
HORVU5Hr1G041860.5	Barley	plastid	66.52	59.82
KRH62072	Soybean	cytosol, mitochondrion, nucleus	31.11	59.65
Solyc08g066600.2.1	Tomato	cytosol, mitochondrion, plastid	67.19	59.52
PGSC0003DMT400005705	Potato	mitochondrion	67.19	59.4
CDY35337	Canola	cytosol	65.61	59.06
CDX77008	Canola	cytosol	65.61	58.53
Bra034270.1-P	Field mustard	cytosol	65.72	58.51
KRH62073	Soybean	cytosol, peroxisome	34.62	58.29
OQU80385	Sorghum	cytosol	54.41	57.95
KRH52752	Soybean	nucleus	65.72	57.75
KRH60226	Soybean	cytosol	36.88	57.29
KRH74278	Soybean	cytosol	61.2	56.47
KRH07260	Soybean	cytosol	60.75	56.47
HORVU4Hr1G057790.4	Barley	plastid	62.67	56.24
Zm00001d032274_P001	Maize	plastid	58.26	55.5
TraesCS4D01G200800.1	Wheat	plastid	61.88	55.25
CDY40469	Canola	cytosol	59.39	55.2
Bra039035.1-P	Field mustard	cytosol	59.39	55.15
CDY35919	Canola	cytosol	59.28	55.04
TraesCS4B01G199800.1	Wheat	plastid	61.65	54.99
AT2G20010.2	Thale cress	nucleus	59.05	54.83
TraesCS4A01G104100.2	Wheat	cytosol	61.65	54.39
PGSC0003DMT400070575	Potato	cytosol	58.03	53.94
Solyc05g018180.2.1	Tomato	cytosol, nucleus	57.01	52.83
KRH41514	Soybean	cytosol	45.36	50.89
Solyc05g041240.1.1	Tomato	endoplasmic reticulum, golgi	17.31	47.22
KRH60225	Soybean	cytosol	20.02	47.2
GSMUA_AchrUn_...	Banana	cytosol	38.24	38.63
GSMUA_Achr1P16870_001	Banana	cytosol	38.57	37.72
GSMUA_Achr1P03530_001	Banana	cytosol	36.31	36.27
GSMUA_Achr4P29190_001	Banana	cytosol	35.29	35.86
GSMUA_Achr1P10950_001	Banana	cytosol	37.56	35.62
GSMUA_Achr2P01140_001	Banana	cytosol	23.3	25.31
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	8.82	24.3
GSMUA_Achr11P...	Banana	cytosol	26.36	20.05

Protein Annotations

EnsemblPlants:GSMUA_Achr3P16260_001	EnsemblPlants:GSMUA_Achr3T16260_001	EnsemblPlantsGene:GSMUA_Achr3G16260_001	InterPro:DUF810	InterPro:IPR014770	InterPro:IPR014772
InterPro:Munc13_1	InterPro:Munc13_dom-2	PANTHER:PTHR31280	PANTHER:PTHR31280:SF15	PFAM:PF05664	PFscan:PS51258
PFscan:PS51259	SEG:seg	UniParc:UPI0002956437	UniProt:M0SF42	MapMan:35.1	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr3G16260_001]

Coordinates

chr3:+:17462817..17468249

Molecular Weight (calculated)

98843.3 Da

IEP (calculated)

8.067

GRAVY (calculated)

-0.316

Length

884 amino acids

Sequence
(BLAST)

001: MARLFRGGSL GDSKRESSGS SSLRLSSSSS SVAAAMSAAD LLSPFGQMGV PLSDPELRET AYEIFVASCR TTGSKPLTYI PQSERTPPSA ERSSSLSPSA
101: SSPSKPSKKP ATVGELIRVQ MRISEQTDSR IRKGLLRIAA GQLGKRVESM VLPLELLQQF KASDFSDQQE YEAWQSRNLK VLEAGLLVHP LVPLNKSDNA
201: SQRLRQIIRG ASEKPIETGR NSESMQVLRS AVMSLACRSP DRSASDFCHW ADGFPLNLHL YQMLLETCFD ASEDGSIIDE IDEVLELLKK TWVILGINQM
301: LHNLCFTWVL FHRFVTTAQV DIDLLHAADN HMDEVAKDAK ATKDSVYSKI LSSTLSSILG WAEKRLLAYH DTFNASNIEY MQSIVSLGVS AAKILVEDIS
401: NEYRRKRREE TDVARSRVDT YIRSSLRTAF AQRMEQADSS RRSSKNQSTP TPVLSILAKD IGELASKEKE LFSPMLKRWH PLAAGVAVAT LHSCYGNELK
501: QFIAGVMELT PDTVQVLKAA DKLEKDLVHI AVEDSVDSDD GGKSLIREMP PYEAESAIAN LVKVWIKTRV DRLKDWVDRN LQQENWNPGA NRENCAPSAT
601: EVLRIINETL DAFFQLPIPM HAAMLPDLLI ELDRSLQHYA LKVKSGCATR SSFLPSLPTL TRCEVGSKLW KKKEKPQNLP KRRSQQLCET TAYKVIFRDL
701: SHVLWDALYI GETTSSRIDP FIKELDPILE MISNTVHNRV RNRVITALMK ASFDGFLLVL LAGGPLRAFS RQDSQIIDED FRSLKDIYLA EGDGLPQELV
801: EKASAQVKNV LPLFHADTES LIERFRQLIT ETYGASAKSR YPLPPTSGNW NPTEANTVLR VLCHRNDESA TRFLKKTYNL PKKL

Best Arabidopsis Sequence Match ( AT2G25800.1 )
(BLAST)

001: MAHLFRELSL GHSKRESTPP PPSHSATSRS SSMSSDLPPS PLGQLAVQLS DSDLRLTAYE IFVAACRSAT GKPLSSAVSV AVLNQDSPNG SPASPAIQRS
101: LTSTAASKMK KALGLRSSSS LSPGSNKSSG SASGSNGKSK RPTTVGELMR IQMRVSEAVD SRVRRAFLRI AASQVGRKIE SVVLPLELLQ QLKSSDFTDQ
201: QEYDAWLKRS LKVLEAGLLL HPRVPLDKTN SSQRLRQIIH GALDRPLETG RNNEQMQSLR SAVMSLATRS DGSFSDSCHW ADGSPFNLRL YELLLEACFD
301: SNDATSMVEE VDDLMEHIKK TWVILGINQM LHNLCFTWLL FSRYVVTGQV EMDLLHACDS QLAEVAKDAK TTKDPEYSQV LSSTLSAILG WAEKRLLAYH
401: DTFDRGNIHT MEGIVSLGVS AARILVEDIS NEYRRRRKGE VDVARTRIET YIRSSLRTSF AQRMEKADSS RRASRNQKNP LPVLAILAKD IGELAIQEKR
501: MFSPILKRWH PFAAGVAVAT LHVCYGNEIK QFIAGISELT PDAVQILRAA DKLEKDLVQI AVEDSVDSDD GGKAIIREMP PFEAETVIAN LVKDWIKARI
601: DRLKEWVDRN LQQEVWKPLE NLEGGYAQSA AEVLRITDET LEAFFQLPIP MHPAVLPDLI IGLDKYLQYY VSKAKSGCGS RTTYMPTMPA LTRCTTGSKF
701: QWKKKEKTPT TQKRESQVSV MNGENSFGVT QICVRINSLH KIRSELDVVE KRVITHLRNC ESAHTDDFSN GLEKKFELTP AACIEGVQQL SESLAYKVVF
801: HDLSHTLWDG LYIGDLSSSR IDPFLKELEQ NLTVIAETVH ERVRTRIITD IMRASLDGFL LVLLAGGPSR AFTRQDSQIM EEDFKSMKDM FWANGDGLAM
901: DLIDKFSTTV RGVLPLFSTD TDSLIERFKG TTLEAYGSSA KSRLPLPPTS GQWNGMEPNT LLRVLCYRND ESATRFLKKT YNLPKKL

Arabidopsis Description

Elongation factor Ts (DUF810) [Source:UniProtKB/TrEMBL;Acc:Q0WQB7]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.