Factsheet for PGSC0003DMT400004282

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
extracellular 4
mitochondrion 2
plastid 1
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	extracellular
Plant-mPloc:	mitochondrion, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400010497	plasma membrane

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G06970.1	PGSC0003DMT400010497	AT2G18960.1	24163289

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400017602	Potato	mitochondrion	21.54	50.45
Solyc02g071830.1.1	Tomato	endoplasmic reticulum, extracellular	31.15	22.56
HORVU2Hr1G041780.2	Barley	cytosol	26.92	13.01
GSMUA_Achr2P01140_001	Banana	cytosol	36.54	11.67
KRH20669	Soybean	endoplasmic reticulum	44.23	10.44
KRH13315	Soybean	cytosol, endoplasmic reticulum, nucleus	43.46	10.24
Bra009303.1-P	Field mustard	cytosol, peroxisome, plastid	42.31	10.21
CDX69997	Canola	cytosol, peroxisome, plastid	42.31	10.19
VIT_13s0084g00630.t01	Wine grape	cytosol	43.85	10.12
AT5G06970.1	Thale cress	cytosol	42.69	10.08
CDX99020	Canola	cytosol, peroxisome, plastid	41.92	10.03
KXG21868	Sorghum	cytosol	42.31	9.95
TraesCS2D01G215400.1	Wheat	nucleus	41.54	9.76
TraesCS1A01G052200.3	Wheat	cytosol, mitochondrion, nucleus	41.15	9.67
TraesCS1B01G069300.2	Wheat	nucleus	41.54	9.6
Zm00001d037867_P001	Maize	cytosol	41.15	9.15
PGSC0003DMT400005705	Potato	mitochondrion	24.62	6.4
KRH13324	Soybean	cytosol	3.08	6.11
PGSC0003DMT400070575	Potato	cytosol	21.92	5.99
Os03t0683700-02	Rice	plasma membrane	5.77	5.77
PGSC0003DMT400044198	Potato	cytosol	19.23	4.91
PGSC0003DMT400034999	Potato	cytosol	18.85	4.77
GSMUA_Achr2P01130_001	Banana	extracellular, golgi	5.77	4.67
HORVU2Hr1G041800.16	Barley	cytosol	6.15	3.7

Protein Annotations

EnsemblPlants:PGSC0003DMT400004282	EnsemblPlantsGene:PGSC0003DMG401001701	InterPro:DUF810	PANTHER:PTHR31280	PANTHER:PTHR31280:SF2	PFAM:PF05664
PGSC:PGSC0003DMG401001701	UniParc:UPI000294D9DE	UniProt:M0ZN64	MapMan:35.1	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG401001701]

Coordinates

chr1:-:68021674..68028309

Molecular Weight (calculated)

29039.9 Da

IEP (calculated)

6.668

GRAVY (calculated)

-0.073

Length

260 amino acids

Sequence
(BLAST)

001: MYSFLAFTWM DGRYLYFRLY FFLAIGDDDL RETTFEILLA AAGPSGSVKH VGGGAHKSSC YRVGESGRKA NELRVLLAKI EESEQRCKGQ CLKSLREIAT
101: PLAERPARGD LTGEVCHWAD GYHLNVKLYE NLLLSVFDVL DEGKLTEVLK GHEPQNHMEG NLENLHSLGI HADITNNRSS LSGFCLDFLV AARVGTRMEE
201: VAVSSARLVP VRCPQQVMSF FSHRKHVSAG SMSQPDCFLL IVVGKQYLFS LGDYSDLVWV

Best Arabidopsis Sequence Match ( AT5G06970.1 )
(BLAST)

0001: MEEENAVEIL QRYRRDRRKL LDFMLAGSLI KKVIMPPGAV TLDDVDLDQV SVDYVINCAK KGGMLELAEA IRDYHDHIGL PYMNSVGTAD EFFLATIPES
0101: SGSPPKRAPP PIPVLISSSS PMVTNPEWCE SPSAPPLMRS ESFDSPKAQE LTVDDIDDFE DDDDLDEVGN FRISRRTAND AADLVPRLPS FATGITDDDL
0201: RETAFEILLA CAGASGGLIV PSKEKKKEKS RSRLIKKLGR KSESVSQSQS SSGLVSLLEM MRGQMEISEA MDIRTRQGLL NALAGKVGKR MDSLLVPLEL
0301: LCCVSRTEFS DKKAYLRWQK RQLNMLAEGL INNPVVGFGE SGRKATDLKS LLLRIEESES LPSSAGEVQR AECLKSLREV AISLAERPAR GDLTGEVCHW
0401: ADGYHLNVRL YEKLLLCVFD ILNDGKLTEE VEEILELLKS TWRVLGITET IHYTCYAWVL FRQYVITSER GLLRHAIQQL KKIPLKEQRG PQERLHLKTL
0501: KCRVDNEEIS FLESFLSPIR SWADKQLGDY HLHFAEGSLV MEDTVTVAMI TWRLLLEESD RAMHSNSSDR EQIESYVLSS IKNTFTRMSL AIDRSDRNNE
0601: HHLALLAEET KKLMKKDSTI FMPILSQRHP QAIAFSASLI HKLYGNKLKP FLDGAEHLTE DAVSVFPAAD SLEQYLLELM TSVCGEDTSG PYFKKLIPYE
0701: VESLSGTLVL RWINSQLGRI LSWVERAYKQ EHWDPISPQQ RYGSSIVEVF RIVEETVDQF FALKVPMRSI ELSALFRGID NAFQVYTNHV MEKLASKDDL
0801: VPPVPVLTRY KKETAIKVFV KKELFDSKHL DERRSINIDV PATAMLCVQL NTLHYAVSQL SKLEDSMWLR WIAKKPREKI VIRKSMVEKS KSFNQKESFE
0901: GSRKDINAAL DRICEFTGTK IIFCDLREPF IENLYKPNVS QSRLEGLIEA LDTELGQLCS VIMEPLRDRI VTSLLQASLD GLLRVLLDGG ASRVFHPSES
1001: KLLEEDVEVL KEFFISGGDG LPRGVVENQV ARVRLVVKLH GYETRELIDD LRSRSSLEMQ QGGKGKLGAD TQTLVRVLCH RNDSEASQFL KKQYKIPRSH
1101: G

Arabidopsis Description

PATROL1Protein unc-13 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8RX56]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.