Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
28499913
mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 99.42 | 99.42 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 76.3 | 76.3 |
| Solyc07g006150.2.1 | Tomato | nucleus | 75.14 | 75.14 |
| PGSC0003DMT400029172 | Potato | cytosol, golgi, plasma membrane | 74.57 | 74.57 |
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 73.99 | 73.99 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 73.99 | 73.99 |
| Bra024071.1-P | Field mustard | cytosol, golgi, nucleus | 73.41 | 73.41 |
| CDX68663 | Canola | golgi, nucleus, plasma membrane | 73.41 | 73.41 |
| AT2G23940.1 | Thale cress | cytosol, golgi, plasma membrane | 72.83 | 72.83 |
| AT4G30500.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 71.68 | 71.68 |
| GSMUA_Achr4P29330_001 | Banana | cytosol, golgi, nucleus | 71.68 | 71.68 |
| EES05756 | Sorghum | golgi | 68.79 | 68.39 |
| Zm00001d051405_P001 | Maize | golgi | 68.21 | 67.82 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 64.74 | 63.64 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 63.58 | 62.5 |
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 63.58 | 62.5 |
| Os02t0666800-01 | Rice | golgi | 62.43 | 62.07 |
| TraesCS6B01G279700.1 | Wheat | extracellular, golgi, plasma membrane | 63.01 | 61.93 |
| Bra011198.1-P | Field mustard | cytosol, golgi, plasma membrane | 73.41 | 57.73 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 72.25 | 56.82 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 15.61 | 47.37 |
Protein Annotations
| MapMan:35.2 | EMBL:ACUP02001203 | EnsemblPlantsGene:GLYMA_02G207700 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005773 | GO:GO:0006624 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | UniProt:I1JGU0 | EnsemblPlants:KRH72369 | ProteinID:KRH72369 |
| ProteinID:KRH72369.1 | PFAM:PF05620 | PANTHER:PTHR13505 | InterPro:SND2/TMEM208 | TMHMM:TMhelix | UniParc:UPI00023BC10D |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr2:-:39256965..39259135
Molecular Weight (calculated)
19770.3 Da
IEP (calculated)
10.091
GRAVY (calculated)
-0.118
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGAKKRK EENARHMARL RQIIIACNVI YVLLRMLVFH SSFTWKHWIG LIVTSLAYVI PYQQLAKMAT PAYAEDGELL DGGFDMSTGG VCGYLHDVIY
101: ITCFVQVMSI VSGKFWYTYL VIPAFGAYKS FGFIKGFLPG GSEESFEDEK TRKKREKMEK KASRPKFAKT RTR
101: ITCFVQVMSI VSGKFWYTYL VIPAFGAYKS FGFIKGFLPG GSEESFEDEK TRKKREKMEK KASRPKFAKT RTR
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.