Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400029172 | Potato | cytosol, golgi, plasma membrane | 97.69 | 97.69 |
| KRH72369 | Soybean | mitochondrion | 75.14 | 75.14 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 74.57 | 74.57 |
| Bra024071.1-P | Field mustard | cytosol, golgi, nucleus | 74.57 | 74.57 |
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 74.57 | 74.57 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 73.99 | 73.99 |
| AT2G23940.1 | Thale cress | cytosol, golgi, plasma membrane | 73.41 | 73.41 |
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 73.41 | 73.41 |
| CDX68663 | Canola | golgi, nucleus, plasma membrane | 72.83 | 72.83 |
| GSMUA_Achr4P29330_001 | Banana | cytosol, golgi, nucleus | 70.52 | 70.52 |
| AT4G30500.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 68.79 | 68.79 |
| Zm00001d051405_P001 | Maize | golgi | 66.47 | 66.09 |
| EES05756 | Sorghum | golgi | 65.9 | 65.52 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 62.43 | 61.36 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 61.85 | 60.8 |
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 61.85 | 60.8 |
| TraesCS6B01G279700.1 | Wheat | extracellular, golgi, plasma membrane | 61.27 | 60.23 |
| Os02t0666800-01 | Rice | golgi | 59.54 | 59.2 |
| Bra011198.1-P | Field mustard | cytosol, golgi, plasma membrane | 72.25 | 56.82 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 71.1 | 55.91 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 16.18 | 49.12 |
Protein Annotations
| EnsemblPlants:Solyc07g006150.2.1 | EnsemblPlantsGene:Solyc07g006150.2 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005773 | GO:GO:0006624 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0019538 | InterPro:SND2/TMEM208 | PANTHER:PTHR13505 | PFAM:PF05620 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000276C3B0 | UniProt:K4CB86 | MapMan:35.2 | : | : |
Description
No Description!
Coordinates
chr7:-:990382..994388
Molecular Weight (calculated)
19692.1 Da
IEP (calculated)
9.878
GRAVY (calculated)
-0.184
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGAKKRK EENTRHMKKL FQVIIACNVI YLLVRGGIFY SSFTWKHIVG LLLTSLAYVL PYKQLASMAK PSYGDDGEMF DGGYDMSTGG ICGYLHDIIY
101: ITCFVQLASI ISDKFWYTYL VIPAFAAYKL SGLIKGFLPQ GSEDAEEDEK TRKKREKLEK KASRTKFVKT RAR
101: ITCFVQLASI ISDKFWYTYL VIPAFAAYKL SGLIKGFLPQ GSEDAEEDEK TRKKREKLEK KASRTKFVKT RAR
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.