Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- golgi 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES05756 | Sorghum | golgi | 96.55 | 96.55 |
| Os02t0666800-01 | Rice | golgi | 79.89 | 79.89 |
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 78.16 | 77.27 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 78.16 | 77.27 |
| TraesCS6B01G279700.1 | Wheat | extracellular, golgi, plasma membrane | 77.59 | 76.7 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 77.59 | 76.7 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 71.26 | 71.68 |
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 70.69 | 71.1 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 70.11 | 70.52 |
| Bra024071.1-P | Field mustard | cytosol, golgi, nucleus | 69.54 | 69.94 |
| AT2G23940.1 | Thale cress | cytosol, golgi, plasma membrane | 69.54 | 69.94 |
| GSMUA_Achr4P29330_001 | Banana | cytosol, golgi, nucleus | 68.97 | 69.36 |
| CDX68663 | Canola | golgi, nucleus, plasma membrane | 68.39 | 68.79 |
| KRH72369 | Soybean | mitochondrion | 67.82 | 68.21 |
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 67.24 | 67.63 |
| Solyc07g006150.2.1 | Tomato | nucleus | 66.09 | 66.47 |
| PGSC0003DMT400029172 | Potato | cytosol, golgi, plasma membrane | 65.52 | 65.9 |
| AT4G30500.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 64.94 | 65.32 |
| Bra011198.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.39 | 54.09 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 67.24 | 53.18 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 13.22 | 40.35 |
Protein Annotations
| EMBL:BT039134 | EnsemblPlants:Zm00001d051405_P001 | EnsemblPlants:Zm00001d051405_T001 | EnsemblPlantsGene:Zm00001d051405 | EntrezGene:100192887 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:SND2/TMEM208 | PANTHER:PTHR13505 | PFAM:PF05620 | ProteinID:AQK54180.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI00017B75AE | UniProt:B4FPU6 | MapMan:35.2 | : |
Description
transmembrane protein
Coordinates
chr4:-:157330998..157334207
Molecular Weight (calculated)
19916.7 Da
IEP (calculated)
10.214
GRAVY (calculated)
-0.078
Length
174 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKQGAKKMK DENKKRLDLL LRIILISNVI YIVVRMAIMH SSFTWKHWIG LMVTSAGYFL PYKQLASMAK PVYSDNGELL DGGFDLSTGG VCEYLYDVIY
101: ITVFVQLMSI ISEKFWWTYL VIPAFAGYKI SGLLRGAFFS GGSEGEVEDE KTRKKREKME KKASRGKMIK TRTR
101: ITVFVQLMSI ISEKFWWTYL VIPAFAGYKI SGLLRGAFFS GGSEGEVEDE KTRKKREKME KKASRGKMIK TRTR
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.