CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

plastid 2
golgi 3
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	plastid, secretory
BaCelLo:	plastid
MultiLoc:	golgi
Plant-mPloc:	plasma membrane, plastid
PProwler:	secretory
WoLF PSORT:	vacuole
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d051405_P001	Maize	golgi	96.55	96.55
TraesCS6D01G226800.1	Wheat	extracellular, golgi, plasma membrane	79.31	78.41
TraesCS6A01G244600.1	Wheat	extracellular, golgi, plasma membrane	79.31	78.41
Os02t0666800-01	Rice	golgi	78.16	78.16
HORVU6Hr1G064230.1	Barley	cytosol, golgi, mitochondrion, plasma membrane	78.74	77.84
TraesCS6B01G279700.1	Wheat	extracellular, golgi, plasma membrane	78.74	77.84
VIT_04s0069g01100.t01	Wine grape	golgi	71.84	72.25
AT2G23940.1	Thale cress	cytosol, golgi, plasma membrane	70.11	70.52
GSMUA_Achr4P29330_001	Banana	cytosol, golgi, nucleus	69.54	69.94
CDX72247	Canola	cytosol, golgi, plasma membrane	68.97	69.36
CDY39209	Canola	cytosol, golgi, nucleus	68.39	68.79
KRH72369	Soybean	mitochondrion	68.39	68.79
KRH02974	Soybean	cytosol, golgi, mitochondrion, plasma membrane	67.82	68.21
Bra024071.1-P	Field mustard	cytosol, golgi, nucleus	67.82	68.21
CDX68663	Canola	golgi, nucleus, plasma membrane	66.67	67.05
Solyc07g006150.2.1	Tomato	nucleus	65.52	65.9
PGSC0003DMT400029172	Potato	cytosol, golgi, plasma membrane	64.94	65.32
AT4G30500.1	Thale cress	cytosol, golgi, mitochondrion, plasma membrane	63.79	64.16
Bra011198.1-P	Field mustard	cytosol, golgi, plasma membrane	66.67	52.73
CDY28192	Canola	cytosol, golgi, plasma membrane	65.52	51.82
GSMUA_Achr2P11620_001	Banana	mitochondrion, nucleus	12.64	38.6

Protein Annotations

MapMan:35.2	EntrezGene:8073925	UniProt:C5Y1D3	EnsemblPlants:EES05756	ProteinID:EES05756	ProteinID:EES05756.1
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0006624
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0019538
PFAM:PF05620	PANTHER:PTHR13505	InterPro:SND2/TMEM208	EnsemblPlantsGene:SORBI_3004G288100	TMHMM:TMhelix	UniParc:UPI0001A85F50
RefSeq:XP_002452780.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:62989957..62992732

Molecular Weight (calculated)

19992.8 Da

IEP (calculated)

10.214

GRAVY (calculated)

-0.075

Length

174 amino acids

Sequence
(BLAST)

001: MAKQGAKKMK DENKKRLELL LRIILVSNAI YIVVRMAIMH SSFTWKHWIG LMVTSAAYFL PYKQLASMAK PVYSDNGELL DGGFDLSTGG VCEYLYDVIY
101: ITVFVQLMSI ISEKFWWTYL VIPAFAGYKI FGLLRGTFFS GGSEGEVEDE KTRKKREKME KKASRGKMIK TRTR

Best Arabidopsis Sequence Match ( AT2G23940.2 )
(BLAST)

001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.