Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 94.22 | 94.22 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 93.64 | 93.64 |
| AT4G30500.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 80.92 | 80.92 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 95.95 | 75.45 |
| KRH72369 | Soybean | mitochondrion | 73.41 | 73.41 |
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 72.83 | 72.83 |
| Solyc07g006150.2.1 | Tomato | nucleus | 72.83 | 72.83 |
| PGSC0003DMT400029172 | Potato | cytosol, golgi, plasma membrane | 72.25 | 72.25 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 71.1 | 71.1 |
| Zm00001d051405_P001 | Maize | golgi | 68.79 | 68.39 |
| GSMUA_Achr4P29330_001 | Banana | cytosol, golgi, nucleus | 67.05 | 67.05 |
| EES05756 | Sorghum | golgi | 67.05 | 66.67 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 63.58 | 62.5 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 62.43 | 61.36 |
| TraesCS6B01G279700.1 | Wheat | extracellular, golgi, plasma membrane | 62.43 | 61.36 |
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 62.43 | 61.36 |
| Os02t0666800-01 | Rice | golgi | 59.54 | 59.2 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 16.76 | 50.88 |
Protein Annotations
| EnsemblPlants:CDX68663 | EnsemblPlantsGene:GSBRNA2T00130331001 | GO:A0A078C0J6 | InterPro:SND2/TMEM208 | PANTHER:PTHR13505 | PFAM:PF05620 |
| ProteinID:CDX68663 | ProteinID:CDX68663.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EE4F75 | MapMan:35.2 |
Description
BnaC01g07900D
Coordinates
chrLK031789:+:591429..592766
Molecular Weight (calculated)
19439.8 Da
IEP (calculated)
10.218
GRAVY (calculated)
-0.116
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGAKKRK DENARHMAKL RRIIIACNVV YVIVRMLIFY SSFTWRHWIG LVVTSLGYAV PYKFLDGMAK PSVSDDGELI DGGFDMSSGG ICGYLHDVLY
101: ITCFVQLASI ISGKFWYAYL VIPAFGSYKA SGLIKGFMSQ GSEGGVEDEK TRKKREKMER KASRGQAVRT RTR
101: ITCFVQLASI ISGKFWYAYL VIPAFGSYKA SGLIKGFMSQ GSEGGVEDEK TRKKREKMER KASRGQAVRT RTR
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.