Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plasma membrane, golgi, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- golgi 2
- extracellular 1
- plasma membrane 2
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 82.66 | 82.66 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 82.08 | 82.08 |
| Bra024071.1-P | Field mustard | cytosol, golgi, nucleus | 80.92 | 80.92 |
| CDX68663 | Canola | golgi, nucleus, plasma membrane | 80.92 | 80.92 |
| AT2G23940.1 | Thale cress | cytosol, golgi, plasma membrane | 76.88 | 76.88 |
| KRH72369 | Soybean | mitochondrion | 71.68 | 71.68 |
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 71.1 | 71.1 |
| Solyc07g006150.2.1 | Tomato | nucleus | 68.79 | 68.79 |
| PGSC0003DMT400029172 | Potato | cytosol, golgi, plasma membrane | 68.79 | 68.79 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 67.05 | 67.05 |
| GSMUA_Achr4P29330_001 | Banana | cytosol, golgi, nucleus | 65.32 | 65.32 |
| Zm00001d051405_P001 | Maize | golgi | 65.32 | 64.94 |
| EES05756 | Sorghum | golgi | 64.16 | 63.79 |
| Bra011198.1-P | Field mustard | cytosol, golgi, plasma membrane | 80.35 | 63.18 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 79.19 | 62.27 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 60.12 | 59.09 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 58.38 | 57.39 |
| TraesCS6B01G279700.1 | Wheat | extracellular, golgi, plasma membrane | 58.38 | 57.39 |
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 58.38 | 57.39 |
| Os02t0666800-01 | Rice | golgi | 54.34 | 54.02 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 13.87 | 42.11 |
Protein Annotations
| MapMan:35.2 | EntrezGene:829173 | UniProt:A0A178UY72 | ProteinID:AEE85773.1 | ArrayExpress:AT4G30500 | EnsemblPlantsGene:AT4G30500 |
| RefSeq:AT4G30500 | TAIR:AT4G30500 | RefSeq:AT4G30500-TAIR-G | EnsemblPlants:AT4G30500.1 | TAIR:AT4G30500.1 | EMBL:AY085506 |
| EMBL:BT025766 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005773 |
| GO:GO:0006624 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0019538 | RefSeq:NP_567848.1 | ProteinID:OAO98996.1 | PFAM:PF05620 | PO:PO:0000013 | PO:PO:0000037 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PANTHER:PTHR13505 | UniProt:Q8LEC2 | InterPro:SND2/TMEM208 | TMHMM:TMhelix | UniParc:UPI00000A4315 | SEG:seg |
Description
At4g30500 [Source:UniProtKB/TrEMBL;Acc:Q8LEC2]
Coordinates
chr4:+:14903351..14905008
Molecular Weight (calculated)
19305.9 Da
IEP (calculated)
10.322
GRAVY (calculated)
-0.102
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGAKKRK DENARHMAKL RLIMILCNIL YVLVRVIISH SSHTWKNWIG LVLTSLGYGI PYKLLHQMAK PSVSDAGELL DGGFDMSTPG MCGYLHDVLY
101: ITCFVQVGSI ISGKFWYAYL VIPAFGAYKA SGLIKGLLSH GSEGGVEDEK TRKKREKMER KASRGQVVKT RSR
101: ITCFVQVGSI ISGKFWYAYL VIPAFGAYKA SGLIKGLLSH GSEGGVEDEK TRKKREKMER KASRGQVVKT RSR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.