Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, extracellular
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- golgi 2
- extracellular 2
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 99.43 | 99.43 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 99.43 | 99.43 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 96.02 | 96.02 |
| EES05756 | Sorghum | golgi | 77.84 | 78.74 |
| Zm00001d051405_P001 | Maize | golgi | 76.7 | 77.59 |
| Os02t0666800-01 | Rice | golgi | 73.86 | 74.71 |
| GSMUA_Achr4P29330_001 | Banana | cytosol, golgi, nucleus | 66.48 | 67.63 |
| AT2G23940.1 | Thale cress | cytosol, golgi, plasma membrane | 65.34 | 66.47 |
| KRH72369 | Soybean | mitochondrion | 61.93 | 63.01 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 61.93 | 63.01 |
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 61.36 | 62.43 |
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 61.36 | 62.43 |
| CDX68663 | Canola | golgi, nucleus, plasma membrane | 61.36 | 62.43 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 60.8 | 61.85 |
| PGSC0003DMT400029172 | Potato | cytosol, golgi, plasma membrane | 60.23 | 61.27 |
| Solyc07g006150.2.1 | Tomato | nucleus | 60.23 | 61.27 |
| Bra024071.1-P | Field mustard | cytosol, golgi, nucleus | 60.23 | 61.27 |
| AT4G30500.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 57.39 | 58.38 |
| Bra011198.1-P | Field mustard | cytosol, golgi, plasma membrane | 61.36 | 49.09 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 60.23 | 48.18 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 13.07 | 40.35 |
Protein Annotations
| EnsemblPlants:TraesCS6B01G279700.1 | EnsemblPlantsGene:TraesCS6B01G279700 | InterPro:SND2/TMEM208 | PANTHER:PTHR13505 | PFAM:PF05620 | SEG:seg |
| TMHMM:TMhelix | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr6B:-:505800825..505803700
Molecular Weight (calculated)
20278.8 Da
IEP (calculated)
10.279
GRAVY (calculated)
-0.164
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGSKKIV ERNRKRMDLL WRIILVSNVI YIVVRMAVMY SSFTWKHWIG LVVTSAAYFL SYKQLSSMTK PEYSDADNRE LLSSGYDLAT GGLSEYIEDV
101: IYITAFVQLT SIISGKFWWT YLVIPAFGGY KIFFLLKGTF FGGGSEGEVE DEKSRKKREK MEKKASRGKM VKTRTR
101: IYITAFVQLT SIISGKFWWT YLVIPAFGGY KIFFLLKGTF FGGGSEGEVE DEKSRKKREK MEKKASRGKM VKTRTR
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.