Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, golgi, cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- golgi 2
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc07g006150.2.1 | Tomato | nucleus | 97.69 | 97.69 |
| KRH72369 | Soybean | mitochondrion | 74.57 | 74.57 |
| Bra024071.1-P | Field mustard | cytosol, golgi, nucleus | 73.99 | 73.99 |
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 73.99 | 73.99 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 73.41 | 73.41 |
| AT2G23940.1 | Thale cress | cytosol, golgi, plasma membrane | 72.83 | 72.83 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 72.83 | 72.83 |
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 72.83 | 72.83 |
| CDX68663 | Canola | golgi, nucleus, plasma membrane | 72.25 | 72.25 |
| GSMUA_Achr4P29330_001 | Banana | cytosol, golgi, nucleus | 69.94 | 69.94 |
| AT4G30500.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 68.79 | 68.79 |
| Zm00001d051405_P001 | Maize | golgi | 65.9 | 65.52 |
| EES05756 | Sorghum | golgi | 65.32 | 64.94 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 62.43 | 61.36 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 61.85 | 60.8 |
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 61.85 | 60.8 |
| TraesCS6B01G279700.1 | Wheat | extracellular, golgi, plasma membrane | 61.27 | 60.23 |
| Os02t0666800-01 | Rice | golgi | 57.8 | 57.47 |
| Bra011198.1-P | Field mustard | cytosol, golgi, plasma membrane | 71.68 | 56.36 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 70.52 | 55.45 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 15.61 | 47.37 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400029172 | EnsemblPlantsGene:PGSC0003DMG400011218 | EntrezGene:102593759 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:SND2/TMEM208 | PANTHER:PTHR13505 | PFAM:PF05620 | PGSC:PGSC0003DMG400011218 | RefSeq:XP_006343579.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0002954124 | UniProt:M1ASC4 | MapMan:35.2 | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400011218]
Coordinates
chr7:-:1510430..1514741
Molecular Weight (calculated)
19654.1 Da
IEP (calculated)
9.969
GRAVY (calculated)
-0.221
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGAKKRK EENTRHMKKL FQVIIGCNVI YLLMRGGIFY SSFTWKHIVG LLLTSLAYTL PYKQLASMAK PSYGDDGEMF DGGYDMSTGG ICGYLHDIIY
101: ITCFVQLASI ISGKFWYTYL VIPAFAAYKL SGLIKGFLPQ GSEDAEEDEK TRKKREKLEK KASRTKFVKT RAR
101: ITCFVQLASI ISGKFWYTYL VIPAFAAYKL SGLIKGFLPQ GSEDAEEDEK TRKKREKLEK KASRTKFVKT RAR
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.