Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- golgi 2
- plasma membrane 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G23940.1 | Thale cress | cytosol, golgi, plasma membrane | 72.25 | 72.25 |
| VIT_04s0069g01100.t01 | Wine grape | golgi | 71.68 | 71.68 |
| KRH72369 | Soybean | mitochondrion | 71.68 | 71.68 |
| KRH02974 | Soybean | cytosol, golgi, mitochondrion, plasma membrane | 71.1 | 71.1 |
| Solyc07g006150.2.1 | Tomato | nucleus | 70.52 | 70.52 |
| CDX72247 | Canola | cytosol, golgi, plasma membrane | 69.94 | 69.94 |
| PGSC0003DMT400029172 | Potato | cytosol, golgi, plasma membrane | 69.94 | 69.94 |
| EES05756 | Sorghum | golgi | 69.94 | 69.54 |
| CDY39209 | Canola | cytosol, golgi, nucleus | 69.36 | 69.36 |
| Zm00001d051405_P001 | Maize | golgi | 69.36 | 68.97 |
| Bra024071.1-P | Field mustard | cytosol, golgi, nucleus | 68.79 | 68.79 |
| CDX68663 | Canola | golgi, nucleus, plasma membrane | 67.05 | 67.05 |
| HORVU6Hr1G064230.1 | Barley | cytosol, golgi, mitochondrion, plasma membrane | 68.21 | 67.05 |
| TraesCS6A01G244600.1 | Wheat | extracellular, golgi, plasma membrane | 67.63 | 66.48 |
| TraesCS6B01G279700.1 | Wheat | extracellular, golgi, plasma membrane | 67.63 | 66.48 |
| TraesCS6D01G226800.1 | Wheat | extracellular, golgi, plasma membrane | 67.63 | 66.48 |
| AT4G30500.1 | Thale cress | cytosol, golgi, mitochondrion, plasma membrane | 65.32 | 65.32 |
| Os02t0666800-01 | Rice | golgi | 64.16 | 63.79 |
| Bra011198.1-P | Field mustard | cytosol, golgi, plasma membrane | 66.47 | 52.27 |
| CDY28192 | Canola | cytosol, golgi, plasma membrane | 65.32 | 51.36 |
| GSMUA_Achr2P11620_001 | Banana | mitochondrion, nucleus | 16.76 | 50.88 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P29330_001 | EnsemblPlants:GSMUA_Achr4T29330_001 | EnsemblPlantsGene:GSMUA_Achr4G29330_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:SND2/TMEM208 | PANTHER:PTHR13505 | PFAM:PF05620 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000296455A |
| UniProt:M0ST45 | MapMan:35.2 | : | : | : | : |
Description
Putative Transmembrane protein 208 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr4G29330_001]
Coordinates
chr4:+:27338718..27342631
Molecular Weight (calculated)
19799.3 Da
IEP (calculated)
10.292
GRAVY (calculated)
-0.292
Length
173 amino acids
Sequence
(BLAST)
(BLAST)
001: MANQGAKKRK EENKKHMTNL RRLIIASNII YILVRMLMFH SSFTWKHWVG LLVTSIAYGF PYKQLDSMAK PTYSDDGELL DGGYDMTTGG ICGYLHDLIY
101: ITSFVQITSI LSGKFWWTYL VIPAFGAYKV TDLLKGSLLG GLGGEMEDEK SRKKREKMEK KASRSKIIKT RNR
101: ITSFVQITSI LSGKFWWTYL VIPAFGAYKV TDLLKGSLLG GLGGEMEDEK SRKKREKMEK KASRSKIIKT RNR
001: MANQGAKKRK EENAKHMAKL RRIIIASNAV YFVVRMLIFY SSFTWKHWIG LVITSLAYAF PYKQLDQMAK PSVTDDGELI DGGFDMTTGG ICGYLHDVIY
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
101: ITCFVQLASI ITGKFWYTYL VIPAFGVYKA SGLIRGFMSQ GSEGGVEDEK SRKKREKMER KASRGQVVKT RTR
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O82222]
SUBAcon: [plasma membrane,golgi,cytosol]
SUBAcon: [plasma membrane,golgi,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.