CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
vacuole 1
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06786	Soybean	plastid	82.72	59.62
VIT_14s0068g00800.t01	Wine grape	plastid	64.4	45.9
GSMUA_Achr7P22600_001	Banana	cytosol	34.03	38.46
KRH74378	Soybean	cytosol	51.83	36.26
KRH07229	Soybean	endoplasmic reticulum	51.31	35.9
KRH07476	Soybean	cytosol	50.79	35.53
KRH39570	Soybean	cytosol	50.26	35.16

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.2	EMBL:ACUP02012024	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G106100	GO:GO:0000149
GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150
GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0031201
GO:GO:0048278	InterPro:IPR000727	UniProt:K7MXQ1	EnsemblPlants:KRG94743	ProteinID:KRG94743	ProteinID:KRG94743.1
PFAM:PF05739	PFscan:PS50192	PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SUPFAM:SSF58038
TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0002958811	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr19:+:35706035..35707976

Molecular Weight (calculated)

21085.2 Da

IEP (calculated)

4.882

GRAVY (calculated)

-0.005

Length

191 amino acids

Sequence
(BLAST)

001: MSFQDIQIGP NPSSRRNQSP SQAVATGIFQ IKTAIAAFRR LVDGVGTVRH SRTPSEAVPT SSGSGEESVG IDVESQPFIR EQKRQEILLL DNEISFNEAM
101: IEEREQGIRE VEEQIEQANE IFKDLAVLVH YQGVVIDDIH SNIDASAGAT TQARVQLAKA SKSVKSKTSW CWWVLAIFVV VLVILLVVLI L

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.