CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 4
vacuole 1
cytosol 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG94743	Soybean	plastid	59.62	82.72
VIT_14s0068g00800.t01	Wine grape	plastid	71.7	70.9
KRH07229	Soybean	endoplasmic reticulum	60.0	58.24
KRH74378	Soybean	cytosol	60.0	58.24
KRH07476	Soybean	cytosol	59.25	57.51
KRH39570	Soybean	cytosol	58.11	56.41
GSMUA_Achr7P22600_001	Banana	cytosol	24.53	38.46

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100787141	MapMan:22.7.1.2	EMBL:ACUP02009878	ncoils:Coil
EnsemblPlantsGene:GLYMA_16G045900	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006810	GO:GO:0006886
GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505	GO:GO:0016020	GO:GO:0016021
GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278	UniProt:I1ML76	InterPro:IPR000727
EnsemblPlants:KRH06786	ProteinID:KRH06786	ProteinID:KRH06786.1	PFAM:PF05739	PFAM:PF14523	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI000233EEF1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr16:-:4343981..4346646

Molecular Weight (calculated)

29302.7 Da

IEP (calculated)

5.715

GRAVY (calculated)

-0.291

Length

265 amino acids

Sequence
(BLAST)

001: MSFQDIQGGP NPPSRRNQSP SQAVAAGIFQ INTAVATFRR LVDGVGTVKD TPEHRQKLHN TRQRILLLVK DSSAKLKSLT ESDRDANANA SKKIEDAKLA
101: RDFQTTLQEF QKVQQLASER ESAYTPAAPS SLPTSSGSGE ESVGIDVESQ PFIREHKRQE ILLLDNEISF NEAMIEEREQ GIREVEEQIG QANEIFKDLA
201: VLVHDQGVVI DDIHSNIDAS AGATTQARVQ LAKASKSVKS KTSWCWWLLA IFVVVLVILL VVLIF

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.