Factsheet for VIT_14s0068g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
vacuole 1
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, golgi, plastid, vacuole
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	vacuole
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	golgi
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06786	Soybean	plastid	70.9	71.7
KRG94743	Soybean	plastid	45.9	64.4
VIT_02s0012g01850.t01	Wine grape	cytosol	57.46	56.2
VIT_16s0039g01850.t01	Wine grape	cytosol	54.85	52.88
GSMUA_Achr7P22600_001	Banana	cytosol	26.87	42.6

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100254896	wikigene:100254896	MapMan:22.7.1.2	ProteinID:CBI21247
ProteinID:CBI21247.3	UniProt:D7SVE8	EMBL:FN595232	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278
InterPro:IPR000727	EntrezGene:LOC100254896	wikigene:LOC100254896	PFAM:PF05739	PFAM:PF14523	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF138	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin_N	TIGR:TC51905	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0001984986	ArrayExpress:VIT_14s0068g00800
EnsemblPlantsGene:VIT_14s0068g00800	EnsemblPlants:VIT_14s0068g00800.t01	unigene:Vvi.8013	RefSeq:XP_002277874	RefSeq:XP_002277874.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:24574332..24590300

Molecular Weight (calculated)

29409.8 Da

IEP (calculated)

6.043

GRAVY (calculated)

-0.219

Length

268 amino acids

Sequence
(BLAST)

001: MSFQDLQNGA KPSSSSLSRT SPSQAVAAGI FQINTAVAGF RRLVDAIGTS KDTPDHRQKL HSSRQRILQL VKETSAKLKS LSESDHAANV NPSKKVEDAK
101: LARDFQTTLQ EFQKVQQLAA ERESTYSPSA PSSIPPASSS DEYLALNMDQ ENQPFLVGQK RQEVLFLGNE IAFNEAIIEE REQGIKEIQD QIGQANEIFR
201: DLAVLVHEQG VVIDDIHSNI EASSAATTQA TAQLSKASKS VKSRSSWCWW VLAIVVLVVV ILLIVLII

Best Arabidopsis Sequence Match ( AT5G46860.1 )
(BLAST)

001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA

Arabidopsis Description

SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.