Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- vacuole 2
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_02s0012g01850.t01 | Wine grape | cytosol | 74.1 | 75.18 |
| GSMUA_Achr7P04850_001 | Banana | cytosol | 70.5 | 71.79 |
| GSMUA_Achr5P04090_001 | Banana | cytosol | 69.78 | 69.53 |
| Os01t0254900-01 | Rice | plasma membrane | 69.06 | 68.57 |
| GSMUA_Achr4P20770_001 | Banana | cytosol | 66.55 | 67.77 |
| EES02705 | Sorghum | cytosol | 67.99 | 67.5 |
| GSMUA_Achr1P15580_001 | Banana | cytosol | 65.83 | 67.03 |
| CDY16976 | Canola | cytosol, plastid | 66.55 | 67.03 |
| CDY38084 | Canola | cytosol | 47.48 | 67.01 |
| TraesCS3A01G175000.1 | Wheat | cytosol | 66.55 | 66.79 |
| TraesCS3D01G180500.1 | Wheat | cytosol | 66.55 | 66.79 |
| HORVU3Hr1G035380.1 | Barley | cytosol | 66.55 | 66.79 |
| CDX78712 | Canola | cytosol, plastid | 65.47 | 65.94 |
| Bra006372.1-P | Field mustard | cytosol, plastid | 65.47 | 65.94 |
| CDX69417 | Canola | cytosol, plastid | 65.47 | 65.23 |
| Bra008592.1-P | Field mustard | cytosol, plastid | 65.47 | 65.23 |
| CDX70720 | Canola | cytosol, plastid | 64.75 | 65.22 |
| AT5G16830.1 | Thale cress | cytosol, plastid | 64.03 | 63.8 |
| Os02t0702800-01 | Rice | cytosol | 55.4 | 57.68 |
| Solyc06g072760.2.1 | Tomato | cytosol | 58.63 | 57.6 |
| EES05663 | Sorghum | cytosol | 54.32 | 56.34 |
| Zm00001d040286_P003 | Maize | cytosol | 60.43 | 56.19 |
| Zm00001d017756_P001 | Maize | extracellular | 49.28 | 55.24 |
| HORVU6Hr1G068640.1 | Barley | cytosol | 52.52 | 54.89 |
| HORVU6Hr1G041590.1 | Barley | cytosol | 52.52 | 54.89 |
| VIT_14s0068g00800.t01 | Wine grape | plastid | 52.88 | 54.85 |
| TraesCS6A01G271000.1 | Wheat | cytosol | 50.36 | 52.04 |
| TraesCS6D01G244100.2 | Wheat | cytosol | 53.6 | 51.03 |
| TraesCS6B01G298100.3 | Wheat | cytosol | 49.64 | 49.82 |
| PGSC0003DMT400069241 | Potato | cytosol | 42.81 | 44.74 |
| Zm00001d008333_P003 | Maize | cytosol | 50.72 | 43.38 |
| Zm00001d039536_P001 | Maize | cytosol | 41.01 | 43.35 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | EntrezGene:100249411 | wikigene:100249411 | MapMan:22.7.1.2 | ProteinID:CBI26504 |
| ProteinID:CBI26504.3 | UniProt:D7T7N3 | EMBL:FN595750 | GO:GO:0000149 | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005768 | GO:GO:0005770 | GO:GO:0005794 | GO:GO:0006623 | GO:GO:0006810 | GO:GO:0006886 |
| GO:GO:0006906 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0012505 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0016043 | GO:GO:0016192 | GO:GO:0030140 | GO:GO:0031201 | GO:GO:0045324 | GO:GO:0048278 |
| InterPro:IPR000727 | EntrezGene:LOC100249411 | wikigene:LOC100249411 | PFAM:PF05739 | PFAM:PF14523 | ScanProsite:PS00914 |
| PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF135 | SMART:SM00397 | SMART:SM00503 | InterPro:SNARE |
| SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N | TIGR:TC63869 | TMHMM:TMhelix | InterPro:T_SNARE_dom |
| UniParc:UPI00015C8EF2 | ArrayExpress:VIT_16s0039g01850 | EnsemblPlantsGene:VIT_16s0039g01850 | EnsemblPlants:VIT_16s0039g01850.t01 | unigene:Vvi.17580 | RefSeq:XP_002274100 |
| RefSeq:XP_002274100.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr16:-:1769459..1774147
Molecular Weight (calculated)
30866.8 Da
IEP (calculated)
5.477
GRAVY (calculated)
-0.262
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFEDLEWGR TRPGQSPLAL ATKRREEDDS SQAVAAGVFR INTAVSAFYR LVNSLGTPKD TLELREKLHK TRLHIGQLVK DTSAKLKQAS ENDQHTEVSA
101: SKRIADAKLA KDFQAVLKEF QKAQRLAVER ETAYTPFVPK EVLPSSYDAR ELEISSGKNL EQQAVLLESR RQEVVLLDNE ITFNEAIIEE REQGIQEIQQ
201: QIGEVNEIFK DLAVLVHGQG TMIDDISSNI EKSHAATGQA STQLEKASKL QKSNSSLSCL LLVIFGVILI IVVIVVVA
101: SKRIADAKLA KDFQAVLKEF QKAQRLAVER ETAYTPFVPK EVLPSSYDAR ELEISSGKNL EQQAVLLESR RQEVVLLDNE ITFNEAIIEE REQGIQEIQQ
201: QIGEVNEIFK DLAVLVHGQG TMIDDISSNI EKSHAATGQA STQLEKASKL QKSNSSLSCL LLVIFGVILI IVVIVVVA
001: MSFQDLESGR GRSTRKFNGG RQDSTQAVAS GIFQINTGVS TFQRLVNTLG TPKDTPELRE KLHKTRLHIG QLVKDTSAKL KEASETDHQS GVNPSKKIAD
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
101: AKLARDFQAV LKEFQKAQQT AAERETTYTP FVPQSALPSS YTAGEVDKVP EQRAQLQESK RQELVLLDNE IAFNEAVIEE REQGIQEIHQ QIGEVNEIFK
201: DLAVLVNDQG VMIDDIGTHI DNSRAATSQG KSQLVQAAKT QKSNSSLTCL LLVIFGIVLL IVIIVLAA
Arabidopsis Description
SYP22VAM3 [Source:UniProtKB/TrEMBL;Acc:A0A178UDT6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.