Factsheet for VIT_08s0007g03890.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20030	Soybean	nucleus	78.73	78.98
KRH32652	Soybean	nucleus	78.41	78.66
PGSC0003DMT400072406	Potato	cytosol	77.78	77.29
Solyc10g083600.1.1	Tomato	nucleus	77.14	72.11
Bra014967.1-P	Field mustard	cytosol	70.79	70.79
CDX77493	Canola	cytosol	70.79	70.79
CDX85117	Canola	nucleus	70.79	70.79
GSMUA_Achr11P...	Banana	mitochondrion	75.87	70.71
EES19780	Sorghum	mitochondrion	69.52	70.65
Zm00001d018141_P001	Maize	mitochondrion	68.25	69.58
Zm00001d038646_P002	Maize	mitochondrion	67.94	69.26
Os01t0513800-01	Rice	nucleus	67.94	69.03
AT3G23620.1	Thale cress	cytosol	68.25	68.47
CDY18105	Canola	nucleus	68.25	68.04
CDY50460	Canola	nucleus	68.25	68.04
Bra028325.1-P	Field mustard	nucleus	67.94	67.72
TraesCS5D01G426000.1	Wheat	mitochondrion	66.35	66.35
TraesCS5B01G208800.1	Wheat	mitochondrion	65.08	65.92
HORVU5Hr1G061870.1	Barley	nucleus	65.4	65.61
TraesCS5A01G215000.1	Wheat	nucleus	65.08	65.5
TraesCS5D01G217000.1	Wheat	mitochondrion	64.76	65.18
Os05t0506900-01	Rice	nucleus	22.86	64.86
GSMUA_Achr5P20210_001	Banana	nucleus	75.24	61.24
CDX95401	Canola	cytosol	21.59	59.65
CDY33857	Canola	cytosol, mitochondrion, nucleus	20.95	54.1
TraesCS2D01G079000.1	Wheat	nucleus	10.16	48.48
TraesCS2A01G080900.1	Wheat	nucleus	9.52	45.45
TraesCS2D01G059200.1	Wheat	cytosol	8.25	39.39
HORVU2Hr1G013300.6	Barley	cytosol	12.7	33.61

Protein Annotations

EntrezGene:100252891	wikigene:100252891	MapMan:17.1.2.2.1.11.1	InterPro:Brix	ProteinID:CBI30248	ProteinID:CBI30248.3
UniProt:D7TJ22	EMBL:FN595991	GO:GO:0000027	GO:GO:0000463	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0019843	InterPro:IPR007109	EntrezGene:LOC100252891	wikigene:LOC100252891	PFAM:PF04427	PFscan:PS50833
PANTHER:PTHR12728	SMART:SM00879	UniParc:UPI00015C92B0	ArrayExpress:VIT_08s0007g03890	EnsemblPlantsGene:VIT_08s0007g03890	EnsemblPlants:VIT_08s0007g03890.t01
unigene:Vvi.19223	RefSeq:XP_002283513	RefSeq:XP_002283513.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:17870579..17875019

Molecular Weight (calculated)

35699.4 Da

IEP (calculated)

10.384

GRAVY (calculated)

-0.594

Length

315 amino acids

Sequence
(BLAST)

001: MLKIKTPKSG KAKREIEKRA PKLVESGKKT LILQGTKTSN VLNAVLTEIY HLKKDSAVRY TRKNENIRPF ESGGETSLEF FSLKTDCSIF VFGSHSKKRP
101: DNLVIGRTYD HHIYDLVEVG VENFKSMESF TYDKKLSPKV GSKPFIAFIG EGFESVDELK HLKEVLLDLL RGEVVENLNL AGLDHAYICT AVSSNRVFFT
201: HCAMRLKKSG TIVPRMELVE VGPSMDLVVR RHRLPNDSVR KEAMKTAKEQ PKKKVKNVSQ DVIQGKVGKI YVPDQQVGSV ALPYKAKGLK RERREAKMKH
301: ETNDRAPKKQ KENSE

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.