Factsheet for Zm00001d038646_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d018141_P001	Maize	mitochondrion	99.03	99.03
EES19780	Sorghum	mitochondrion	94.82	94.52
Os01t0513800-01	Rice	nucleus	88.67	88.39
TraesCS5D01G217000.1	Wheat	mitochondrion	80.26	79.23
TraesCS5A01G215000.1	Wheat	nucleus	80.26	79.23
TraesCS5B01G208800.1	Wheat	mitochondrion	79.29	78.78
TraesCS5D01G426000.1	Wheat	mitochondrion	80.26	78.73
HORVU5Hr1G061870.1	Barley	nucleus	79.94	78.66
Os05t0506900-01	Rice	nucleus	25.89	72.07
PGSC0003DMT400072406	Potato	cytosol	71.84	70.03
VIT_08s0007g03890.t01	Wine grape	nucleus	69.26	67.94
GSMUA_Achr11P...	Banana	mitochondrion	73.79	67.46
KRH20030	Soybean	nucleus	67.96	66.88
KRH32652	Soybean	nucleus	67.96	66.88
Solyc10g083600.1.1	Tomato	nucleus	71.84	65.88
CDX77493	Canola	cytosol	63.75	62.54
Bra014967.1-P	Field mustard	cytosol	63.75	62.54
CDX85117	Canola	nucleus	63.43	62.22
AT3G23620.1	Thale cress	cytosol	62.46	61.47
CDY18105	Canola	nucleus	62.46	61.08
Bra028325.1-P	Field mustard	nucleus	62.46	61.08
CDY50460	Canola	nucleus	62.14	60.76
GSMUA_Achr5P20210_001	Banana	nucleus	74.43	59.43
TraesCS2D01G079000.1	Wheat	nucleus	12.3	57.58
CDX95401	Canola	cytosol	18.77	50.88
TraesCS2A01G080900.1	Wheat	nucleus	10.68	50.0
CDY33857	Canola	cytosol, mitochondrion, nucleus	16.5	41.8
TraesCS2D01G059200.1	Wheat	cytosol	8.74	40.91
HORVU2Hr1G013300.6	Barley	cytosol	14.24	36.97

Protein Annotations

EMBL:EU962547	EnsemblPlants:Zm00001d038646_P002	EnsemblPlants:Zm00001d038646_T002	EnsemblPlantsGene:Zm00001d038646	EntrezGene:100282857	InterPro:Brix
InterPro:IPR007109	ncoils:Coil	PANTHER:PTHR12728	PFAM:PF04427	PFscan:PS50833	ProteinID:AQK87081.1
ProteinID:AQK87083.1	SEG:seg	SMART:SM00879	UniParc:UPI000182CB3C	UniProt:B6TC32	MapMan:17.1.2.2.1.11.1

Description

Brix domain-containing protein 1

Coordinates

chr6:-:161644067..161647957

Molecular Weight (calculated)

35134.9 Da

IEP (calculated)

10.268

GRAVY (calculated)

-0.522

Length

309 amino acids

Sequence
(BLAST)

001: MVASIRVPKT QRARRELLKH APKLVETSKK TLILHGTKTS AVLNSVLSDI YHLKRDNAVK YTKKNDNIRP FESGGESSLE FFSLKADCSL IVYGSHSKKR
101: PNNLILARTY DHHIYDLVEV GVENYKSMES YVYDKKLAPL LGSKPFFAFI GEHFESSEEL KHLKEVLLDL FRGEVVENLN LAGVDRIYVC TAISPTTVYM
201: MHCALRLKRS GTSIPRMELV EVGPSMDLVV RRHRLPAESL KKEAMKTAEH AKKMKNVTKD PVQGKLGKVY MPDQQVGKLT LSNDVKGLKR ERREAKKNQD
301: SKKQKVNPE

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.