Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
26228564
|
msms PMID:
26228564
doi
Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G217000.1 | Wheat | mitochondrion | 99.04 | 99.04 |
| TraesCS5B01G208800.1 | Wheat | mitochondrion | 98.08 | 98.71 |
| HORVU5Hr1G061870.1 | Barley | nucleus | 94.89 | 94.59 |
| Os01t0513800-01 | Rice | nucleus | 83.39 | 84.19 |
| EES19780 | Sorghum | mitochondrion | 81.79 | 82.58 |
| Zm00001d018141_P001 | Maize | mitochondrion | 79.87 | 80.91 |
| Zm00001d038646_P002 | Maize | mitochondrion | 79.23 | 80.26 |
| Os05t0506900-01 | Rice | nucleus | 26.52 | 74.77 |
| TraesCS2A01G080900.1 | Wheat | nucleus | 14.38 | 68.18 |
| PGSC0003DMT400072406 | Potato | cytosol | 66.77 | 65.93 |
| VIT_08s0007g03890.t01 | Wine grape | nucleus | 65.5 | 65.08 |
| KRH32652 | Soybean | nucleus | 64.22 | 64.01 |
| KRH20030 | Soybean | nucleus | 63.9 | 63.69 |
| Solyc10g083600.1.1 | Tomato | nucleus | 67.09 | 62.31 |
| GSMUA_Achr11P... | Banana | mitochondrion | 67.09 | 62.13 |
| CDX85117 | Canola | nucleus | 61.98 | 61.59 |
| CDX77493 | Canola | cytosol | 61.98 | 61.59 |
| Bra014967.1-P | Field mustard | cytosol | 61.98 | 61.59 |
| CDY18105 | Canola | nucleus | 60.7 | 60.13 |
| AT3G23620.1 | Thale cress | cytosol | 60.06 | 59.87 |
| CDY50460 | Canola | nucleus | 60.38 | 59.81 |
| Bra028325.1-P | Field mustard | nucleus | 60.38 | 59.81 |
| GSMUA_Achr5P20210_001 | Banana | nucleus | 69.33 | 56.07 |
| CDX95401 | Canola | cytosol | 19.49 | 53.51 |
| CDY33857 | Canola | cytosol, mitochondrion, nucleus | 15.97 | 40.98 |
| TraesCS6A01G238100.1 | Wheat | plastid | 9.58 | 19.48 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G215000.1 | EnsemblPlantsGene:TraesCS5A01G215000 | InterPro:Brix | InterPro:IPR007109 | ncoils:Coil | PANTHER:PTHR12728 |
| PFAM:PF04427 | PFscan:PS50833 | SEG:seg | SMART:SM00879 | MapMan:17.1.2.2.1.11.1 | : |
Description
No Description!
Coordinates
chr5A:-:430246359..430248321
Molecular Weight (calculated)
35469.3 Da
IEP (calculated)
10.392
GRAVY (calculated)
-0.542
Length
313 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKMAIRVPK SMRAKRELLK HAPKLVENGK KMLILHGTKT SAVLNSVLAD LFHLKRDHAV KYTKKNDSIR PFESGGETSL EFFSLKSDCS LLVYGSHSKK
101: RPNNLVFGRT YDHHIYDLVE VGVENYKSIE SYAYDKKLAP KLGTKPFFAF IGEHFESVEG LKHLKEMLLD HFKGEVVENL NLAGVDRIFV CTAISPTTVY
201: MMHCALRLKR SGTSIPRMEL VEVGPSMDLV LRRHRQAAES LQKEAMKAPG HAKKVKNVTN NPVEGKQGRI YIPDQEVSKL TVTSNIKGLK RERRDAKKNK
301: EQSKKQKVAE NPE
101: RPNNLVFGRT YDHHIYDLVE VGVENYKSIE SYAYDKKLAP KLGTKPFFAF IGEHFESVEG LKHLKEMLLD HFKGEVVENL NLAGVDRIFV CTAISPTTVY
201: MMHCALRLKR SGTSIPRMEL VEVGPSMDLV LRRHRQAAES LQKEAMKAPG HAKKVKNVTN NPVEGKQGRI YIPDQEVSKL TVTSNIKGLK RERRDAKKNK
301: EQSKKQKVAE NPE
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
Arabidopsis Description
Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.