Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY33857 | Canola | cytosol, mitochondrion, nucleus | 57.02 | 53.28 |
| Os05t0506900-01 | Rice | nucleus | 51.75 | 53.15 |
| CDY18105 | Canola | nucleus | 75.44 | 27.22 |
| CDX77493 | Canola | cytosol | 74.56 | 26.98 |
| CDX85117 | Canola | nucleus | 74.56 | 26.98 |
| CDY50460 | Canola | nucleus | 74.56 | 26.9 |
| AT3G23620.1 | Thale cress | cytosol | 68.42 | 24.84 |
| KRH32652 | Soybean | nucleus | 61.4 | 22.29 |
| KRH20030 | Soybean | nucleus | 59.65 | 21.66 |
| VIT_08s0007g03890.t01 | Wine grape | nucleus | 59.65 | 21.59 |
| Os01t0513800-01 | Rice | nucleus | 53.51 | 19.68 |
| TraesCS5B01G208800.1 | Wheat | mitochondrion | 53.51 | 19.61 |
| PGSC0003DMT400072406 | Potato | cytosol | 54.39 | 19.56 |
| GSMUA_Achr11P... | Banana | mitochondrion | 57.89 | 19.53 |
| TraesCS5A01G215000.1 | Wheat | nucleus | 53.51 | 19.49 |
| TraesCS5D01G217000.1 | Wheat | mitochondrion | 53.51 | 19.49 |
| HORVU5Hr1G061870.1 | Barley | nucleus | 52.63 | 19.11 |
| TraesCS5D01G426000.1 | Wheat | mitochondrion | 52.63 | 19.05 |
| EES19780 | Sorghum | mitochondrion | 51.75 | 19.03 |
| Zm00001d018141_P001 | Maize | mitochondrion | 50.88 | 18.77 |
| Zm00001d038646_P002 | Maize | mitochondrion | 50.88 | 18.77 |
| Solyc10g083600.1.1 | Tomato | nucleus | 54.39 | 18.4 |
| GSMUA_Achr5P20210_001 | Banana | nucleus | 59.65 | 17.57 |
| TraesCS2D01G059200.1 | Wheat | cytosol | 4.39 | 7.58 |
| HORVU2Hr1G013300.6 | Barley | cytosol | 4.39 | 4.2 |
| TraesCS2A01G080900.1 | Wheat | nucleus | 1.75 | 3.03 |
| TraesCS2D01G079000.1 | Wheat | nucleus | 1.75 | 3.03 |
Protein Annotations
| EnsemblPlants:CDX95401 | EnsemblPlantsGene:GSBRNA2T00101128001 | GO:A0A078E211 | PANTHER:PTHR12728 | ProteinID:CDX95401 | ProteinID:CDX95401.1 |
| TMHMM:TMhelix | UniParc:UPI0004EE58ED | MapMan:17.1.2.2.1.11.1 | : | : | : |
Description
BnaC04g27570D
Coordinates
chrLK031888:+:1141487..1145922
Molecular Weight (calculated)
12867.0 Da
IEP (calculated)
9.895
GRAVY (calculated)
0.212
Length
114 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEIRTPKTH KAKRVLEQRV PKLVENGKKT LILNGTKTSA TLSAVLMELY FIINSIAIKY SRRNENIRPF ESGGETSLEF FSLKTDCSIF AVSLLQLCFV
101: ALTIGNLCIH LVYV
101: ALTIGNLCIH LVYV
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
Arabidopsis Description
Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.