Factsheet for GSMUA_Achr5P20210_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	mitochondrion	73.9	84.62
VIT_08s0007g03890.t01	Wine grape	nucleus	61.24	75.24
Zm00001d038646_P002	Maize	mitochondrion	59.43	74.43
Zm00001d018141_P001	Maize	mitochondrion	59.43	74.43
Os01t0513800-01	Rice	nucleus	59.43	74.19
EES19780	Sorghum	mitochondrion	59.43	74.19
PGSC0003DMT400072406	Potato	cytosol	59.69	72.87
KRH20030	Soybean	nucleus	58.4	71.97
KRH32652	Soybean	nucleus	58.14	71.66
TraesCS5D01G426000.1	Wheat	mitochondrion	57.11	70.16
HORVU5Hr1G061870.1	Barley	nucleus	56.85	70.06
TraesCS5B01G208800.1	Wheat	mitochondrion	56.07	69.77
Os05t0506900-01	Rice	nucleus	19.9	69.37
TraesCS5A01G215000.1	Wheat	nucleus	56.07	69.33
TraesCS5D01G217000.1	Wheat	mitochondrion	56.07	69.33
Solyc10g083600.1.1	Tomato	nucleus	59.95	68.84
Bra014967.1-P	Field mustard	cytosol	52.97	65.08
CDX85117	Canola	nucleus	52.97	65.08
CDX77493	Canola	cytosol	52.97	65.08
CDY50460	Canola	nucleus	52.2	63.92
AT3G23620.1	Thale cress	cytosol	51.68	63.69
CDY18105	Canola	nucleus	51.94	63.61
Bra028325.1-P	Field mustard	nucleus	51.68	63.29
CDX95401	Canola	cytosol	17.57	59.65
CDY33857	Canola	cytosol, mitochondrion, nucleus	16.54	52.46
TraesCS2D01G079000.1	Wheat	nucleus	8.53	50.0
TraesCS2A01G080900.1	Wheat	nucleus	8.01	46.97
TraesCS2D01G059200.1	Wheat	cytosol	7.49	43.94
HORVU2Hr1G013300.6	Barley	cytosol	10.85	35.29

Protein Annotations

EnsemblPlants:GSMUA_Achr5P20210_001	EnsemblPlants:GSMUA_Achr5T20210_001	EnsemblPlantsGene:GSMUA_Achr5G20210_001	InterPro:Brix	InterPro:IPR007109	ncoils:Coil
PANTHER:PTHR12728	PFAM:PF04427	PFscan:PS50833	SEG:seg	SMART:SM00879	UniParc:UPI000296FC77
UniProt:M0T050	MapMan:17.1.2.2.1.11.1	:	:	:	:

Description

Ribosome production factor 2 homolog [Source:GMGC_GENE;Acc:GSMUA_Achr5G20210_001]

Coordinates

chr5:-:21929962..21933247

Molecular Weight (calculated)

44165.7 Da

IEP (calculated)

10.441

GRAVY (calculated)

-0.521

Length

387 amino acids

Sequence
(BLAST)

001: MPQTVLVLKI FHTVQVEELA FGNEDIHRRI WTLEKTLKLD NPSHRFFDRS SATSSPFQPQ RKPEVPDLCL PTMLKIKTPK THRAKREIEK RAPKFVENGK
101: KTLILHGTKT SDVLNTVLTQ IYHLKRDNAV KYTKKNENIR PFESGGETSL EFFSLKTDCS LFVFGSHSKK RPNNLVLGRM FDHHIYDLVE VGVENFRPIE
201: SFEYDKKLTP RIGSKPFFAF IGEGFESVEE LKHLKEVLLD LFRGEVVENL NLAGIDRVFV CTALSSSTVF LTHCALRLKR SGTAIPRMEL VEVGPSMDLA
301: VRRHRLPNDS LKKEAMKTTS EQPKKKIKNV SSDVLQGKIG KIYIPDQKVG GITLSSDVKG LKRERREAKK RKVGIENEAK KRKTASD

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.