Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 4
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G217000.1 | Wheat | mitochondrion | 94.9 | 95.21 |
| TraesCS5A01G215000.1 | Wheat | nucleus | 94.59 | 94.89 |
| TraesCS5B01G208800.1 | Wheat | mitochondrion | 93.63 | 94.53 |
| Os01t0513800-01 | Rice | nucleus | 81.85 | 82.9 |
| EES19780 | Sorghum | mitochondrion | 80.89 | 81.94 |
| Zm00001d018141_P001 | Maize | mitochondrion | 79.3 | 80.58 |
| Zm00001d038646_P002 | Maize | mitochondrion | 78.66 | 79.94 |
| Os05t0506900-01 | Rice | nucleus | 25.48 | 72.07 |
| PGSC0003DMT400072406 | Potato | cytosol | 67.2 | 66.56 |
| VIT_08s0007g03890.t01 | Wine grape | nucleus | 65.61 | 65.4 |
| KRH32652 | Soybean | nucleus | 64.01 | 64.01 |
| KRH20030 | Soybean | nucleus | 63.69 | 63.69 |
| GSMUA_Achr11P... | Banana | mitochondrion | 67.83 | 63.02 |
| Solyc10g083600.1.1 | Tomato | nucleus | 67.52 | 62.91 |
| Bra014967.1-P | Field mustard | cytosol | 61.15 | 60.95 |
| CDX85117 | Canola | nucleus | 61.15 | 60.95 |
| CDX77493 | Canola | cytosol | 61.15 | 60.95 |
| AT3G23620.1 | Thale cress | cytosol | 60.19 | 60.19 |
| CDY18105 | Canola | nucleus | 60.19 | 59.81 |
| CDY50460 | Canola | nucleus | 59.87 | 59.49 |
| Bra028325.1-P | Field mustard | nucleus | 59.87 | 59.49 |
| GSMUA_Achr5P20210_001 | Banana | nucleus | 70.06 | 56.85 |
| CDX95401 | Canola | cytosol | 19.11 | 52.63 |
| HORVU2Hr1G013300.6 | Barley | cytosol | 17.52 | 46.22 |
| CDY33857 | Canola | cytosol, mitochondrion, nucleus | 16.24 | 41.8 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G061870.1 | EnsemblPlantsGene:HORVU5Hr1G061870 | InterPro:Brix | InterPro:IPR007109 | ncoils:Coil | PANTHER:PTHR12728 |
| PFAM:PF04427 | PFscan:PS50833 | SMART:SM00879 | UniParc:UPI000224BF77 | UniProt:M0YAU1 | MapMan:17.1.2.2.1.11.1 |
Description
No Description!
Coordinates
chrchr5H:-:482425442..482428147
Molecular Weight (calculated)
35597.5 Da
IEP (calculated)
10.421
GRAVY (calculated)
-0.546
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKMGPIRVP KTMRAKRELL KHAPKLVENG KKMLILHGTK TSAVLNSVLA DFFHLKRDHA VKFTKKNDSI RPFESGGETS LEFFSLKSDC SLLVYGSHSK
101: KRPNNLVLGR TYDHHIYDLV EVGVENYKSI ESYAYDKKLA PKLGTKPFFA FIGEHFESVE GLKHLKEMLL DHFKGEVVEN LNLAGVDRIF VCTAISPTTV
201: YMMHCALRLK RSGTSIPRME LVEVGPSMDL VLRRHRQAAD SLQKEAMKAP GHAKKVKNVT DHPIEGKRGR IYIPDQEVSK LTVTSNIKGL KRERRDAKKN
301: KEHSKKQKVG ENPE
101: KRPNNLVLGR TYDHHIYDLV EVGVENYKSI ESYAYDKKLA PKLGTKPFFA FIGEHFESVE GLKHLKEMLL DHFKGEVVEN LNLAGVDRIF VCTAISPTTV
201: YMMHCALRLK RSGTSIPRME LVEVGPSMDL VLRRHRQAAD SLQKEAMKAP GHAKKVKNVT DHPIEGKRGR IYIPDQEVSK LTVTSNIKGL KRERRDAKKN
301: KEHSKKQKVG ENPE
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
Arabidopsis Description
Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.