CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra014967.1-P	Field mustard	cytosol	98.73	98.73
CDX77493	Canola	cytosol	98.73	98.73
CDY18105	Canola	nucleus	91.75	91.46
CDY50460	Canola	nucleus	91.75	91.46
AT3G23620.1	Thale cress	cytosol	80.63	80.89
CDX95401	Canola	cytosol	26.98	74.56
KRH32652	Soybean	nucleus	72.38	72.61
KRH20030	Soybean	nucleus	71.11	71.34
VIT_08s0007g03890.t01	Wine grape	nucleus	70.79	70.79
PGSC0003DMT400072406	Potato	cytosol	68.25	67.82
Os01t0513800-01	Rice	nucleus	64.44	65.48
EES19780	Sorghum	mitochondrion	63.17	64.19
Solyc10g083600.1.1	Tomato	nucleus	68.25	63.8
Zm00001d018141_P001	Maize	mitochondrion	62.54	63.75
Zm00001d038646_P002	Maize	mitochondrion	62.22	63.43
TraesCS5B01G208800.1	Wheat	mitochondrion	61.27	62.06
TraesCS5A01G215000.1	Wheat	nucleus	61.59	61.98
TraesCS5D01G217000.1	Wheat	mitochondrion	61.59	61.98
TraesCS5D01G426000.1	Wheat	mitochondrion	61.59	61.59
Os05t0506900-01	Rice	nucleus	21.59	61.26
HORVU5Hr1G061870.1	Barley	nucleus	60.95	61.15
GSMUA_Achr11P...	Banana	mitochondrion	64.76	60.35
CDY33857	Canola	cytosol, mitochondrion, nucleus	22.22	57.38
GSMUA_Achr5P20210_001	Banana	nucleus	65.08	52.97
TraesCS2D01G079000.1	Wheat	nucleus	8.89	42.42
TraesCS2A01G080900.1	Wheat	nucleus	8.57	40.91
TraesCS2D01G059200.1	Wheat	cytosol	7.62	36.36
HORVU2Hr1G013300.6	Barley	cytosol	11.43	30.25

Protein Annotations

EnsemblPlants:CDX85117	EnsemblPlantsGene:GSBRNA2T00142610001	InterPro:Brix	InterPro:IPR007109	PANTHER:PTHR12728	PFAM:PF04427
PFscan:PS50833	ProteinID:CDX85117	ProteinID:CDX85117.1	SEG:seg	SMART:SM00879	UniParc:UPI0004EE3AC4
MapMan:17.1.2.2.1.11.1	:	:	:	:	:

Description

BnaC07g07890D

Coordinates

chrLK031840:+:658330..660364

Molecular Weight (calculated)

35692.6 Da

IEP (calculated)

10.362

GRAVY (calculated)

-0.608

Length

315 amino acids

Sequence
(BLAST)

001: MMEIRTPKTH KAKRVLEKRA PKLVENGKKT LILHGTKTSA TVSSVLMELY RLKKGGAIKY SRRNENIRPF ESGGETSLEF FSLKTDCSIF VYGSHSKKRP
101: DNLVLGRMYD HHVYDLIEVG IENFKSLLSF SYDKKIAPHE GSKPFICFTG EGFENVQELK QLKEVLTDLF RGEVVENLNL TGLDRAYICT AVSPAKVFLT
201: HCAIKLKKSG TIVPRIELVE VGPSMDLVIR RNRFPNEGLR KEAMKSSKDK PKKKVKNVDQ DDVLGKLGRV YIPEQEVGKI PLPDKSKGVK RERREGKVKK
301: NKEEGSASKK LKESE

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.