Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 4
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G217000.1 | Wheat | mitochondrion | 90.79 | 91.37 |
| Os01t0513800-01 | Rice | nucleus | 83.49 | 84.84 |
| EES19780 | Sorghum | mitochondrion | 81.59 | 82.9 |
| TraesCS2D01G079000.1 | Wheat | nucleus | 17.14 | 81.82 |
| Zm00001d018141_P001 | Maize | mitochondrion | 79.37 | 80.91 |
| Zm00001d038646_P002 | Maize | mitochondrion | 78.73 | 80.26 |
| Os05t0506900-01 | Rice | nucleus | 26.03 | 73.87 |
| PGSC0003DMT400072406 | Potato | cytosol | 67.62 | 67.19 |
| VIT_08s0007g03890.t01 | Wine grape | nucleus | 66.35 | 66.35 |
| TraesCS2D01G059200.1 | Wheat | cytosol | 13.65 | 65.15 |
| KRH20030 | Soybean | nucleus | 64.13 | 64.33 |
| KRH32652 | Soybean | nucleus | 63.81 | 64.01 |
| GSMUA_Achr11P... | Banana | mitochondrion | 67.94 | 63.31 |
| Solyc10g083600.1.1 | Tomato | nucleus | 67.62 | 63.2 |
| CDX85117 | Canola | nucleus | 61.59 | 61.59 |
| CDX77493 | Canola | cytosol | 61.59 | 61.59 |
| Bra014967.1-P | Field mustard | cytosol | 61.59 | 61.59 |
| CDY18105 | Canola | nucleus | 60.32 | 60.13 |
| CDY50460 | Canola | nucleus | 60.0 | 59.81 |
| Bra028325.1-P | Field mustard | nucleus | 60.0 | 59.81 |
| AT3G23620.1 | Thale cress | cytosol | 59.37 | 59.55 |
| GSMUA_Achr5P20210_001 | Banana | nucleus | 70.16 | 57.11 |
| CDX95401 | Canola | cytosol | 19.05 | 52.63 |
| CDY33857 | Canola | cytosol, mitochondrion, nucleus | 15.56 | 40.16 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G426000.1 | EnsemblPlantsGene:TraesCS5D01G426000 | InterPro:Brix | InterPro:IPR007109 | ncoils:Coil | PANTHER:PTHR12728 |
| PFAM:PF04427 | PFscan:PS50833 | SEG:seg | SMART:SM00879 | MapMan:17.1.2.2.1.11.1 | : |
Description
No Description!
Coordinates
chr5D:+:484571775..484575310
Molecular Weight (calculated)
35943.7 Da
IEP (calculated)
10.121
GRAVY (calculated)
-0.575
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKMVAIRVP RNMRAKRELL KHAPKLVENG KKMLILHGTK TSAVLNDVLA DFFHLKRDHA VKYTKKNDNI RPFESGGETS LEFFSLKSDC SLLVYGSHSK
101: ERPNNLVLGR TYDHHIYDLV EVGVENYKSI ESIESYAYDK KLAPKLGTKP FFAFIGEHFE SVDELKHLKE MLLDHFKGEV VENLNLAGVD RIFVCTAIPP
201: TTVYMMHCAL RLKRSGTSIP RMELVEVGPS MDLVVRRHQR PSESLQKEAM KAPGHAKKVK NVTNNPIDGK EGRIYIPDQE VSKLTLTSDI KGLKRERREA
301: KKNKEHSKKQ KVNPE
101: ERPNNLVLGR TYDHHIYDLV EVGVENYKSI ESIESYAYDK KLAPKLGTKP FFAFIGEHFE SVDELKHLKE MLLDHFKGEV VENLNLAGVD RIFVCTAIPP
201: TTVYMMHCAL RLKRSGTSIP RMELVEVGPS MDLVVRRHQR PSESLQKEAM KAPGHAKKVK NVTNNPIDGK EGRIYIPDQE VSKLTLTSDI KGLKRERREA
301: KKNKEHSKKQ KVNPE
1: MKFAFLICLI VTSVMSIVTV RNVEAKRLLL EEIPQLHHEG SPQVVKLLDD DCMDGCHMKC IPNNRITPCL CLC
Arabidopsis Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G03826.1); Has 30201 Blast hits to 17322 protei /.../780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT5G43695]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.