Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY18105 | Canola | nucleus | 99.37 | 99.37 |
| Bra014967.1-P | Field mustard | cytosol | 92.41 | 92.7 |
| AT3G23620.1 | Thale cress | cytosol | 83.54 | 84.08 |
| KRH32652 | Soybean | nucleus | 69.62 | 70.06 |
| KRH20030 | Soybean | nucleus | 68.35 | 68.79 |
| VIT_08s0007g03890.t01 | Wine grape | nucleus | 67.72 | 67.94 |
| PGSC0003DMT400072406 | Potato | cytosol | 66.77 | 66.56 |
| Os01t0513800-01 | Rice | nucleus | 61.71 | 62.9 |
| Zm00001d018141_P001 | Maize | mitochondrion | 61.39 | 62.78 |
| Solyc10g083600.1.1 | Tomato | nucleus | 66.77 | 62.61 |
| Zm00001d038646_P002 | Maize | mitochondrion | 61.08 | 62.46 |
| EES19780 | Sorghum | mitochondrion | 60.76 | 61.94 |
| TraesCS5B01G208800.1 | Wheat | mitochondrion | 59.49 | 60.45 |
| TraesCS5A01G215000.1 | Wheat | nucleus | 59.81 | 60.38 |
| TraesCS5D01G217000.1 | Wheat | mitochondrion | 59.81 | 60.38 |
| Os05t0506900-01 | Rice | nucleus | 21.2 | 60.36 |
| TraesCS5D01G426000.1 | Wheat | mitochondrion | 59.81 | 60.0 |
| HORVU5Hr1G061870.1 | Barley | nucleus | 59.49 | 59.87 |
| GSMUA_Achr11P... | Banana | mitochondrion | 62.66 | 58.58 |
| GSMUA_Achr5P20210_001 | Banana | nucleus | 63.29 | 51.68 |
| TraesCS2D01G079000.1 | Wheat | nucleus | 8.86 | 42.42 |
| TraesCS2A01G080900.1 | Wheat | nucleus | 8.54 | 40.91 |
| TraesCS2D01G059200.1 | Wheat | cytosol | 7.59 | 36.36 |
| HORVU2Hr1G013300.6 | Barley | cytosol | 11.39 | 30.25 |
Protein Annotations
Description
AT3G23620 (E=5e-130) | brix domain-containing protein
Coordinates
chrA01:-:18547781..18549417
Molecular Weight (calculated)
35798.6 Da
IEP (calculated)
10.455
GRAVY (calculated)
-0.692
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEIRTPKTH KAKRVLEKRA PKLVENGKKT LILHGTKTSA TLSSVLMELY RLKKGGAIKY SRRNENIRPF ESGGETSLEF FSQKTDCSIF AYGSHTKKRP
101: DNLVLGRMYD HHVYDLIEVG IDNFKSLLSF SYDKKIAPHE GSKPFICFTG EGFENVPELK QLKEVLTDLF RGEVVDNLNL TGLDRAYICS AISPTKVFLT
201: HCAIKLKKSG SIVPRIELVE VGPSMDLVIR RNRLPNEGLR KEAMKSSKDK PKKKVKNVDQ DDVLGKRGRI FIPEQEVGKT PLPDKSKGVK RERREGKLKK
301: KSKEEGSASK KHKESE
101: DNLVLGRMYD HHVYDLIEVG IDNFKSLLSF SYDKKIAPHE GSKPFICFTG EGFENVPELK QLKEVLTDLF RGEVVDNLNL TGLDRAYICS AISPTKVFLT
201: HCAIKLKKSG SIVPRIELVE VGPSMDLVIR RNRLPNEGLR KEAMKSSKDK PKKKVKNVDQ DDVLGKRGRI FIPEQEVGKT PLPDKSKGVK RERREGKLKK
301: KSKEEGSASK KHKESE
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
Arabidopsis Description
Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.