Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra028325.1-P | Field mustard | nucleus | 84.08 | 83.54 |
| CDY18105 | Canola | nucleus | 83.76 | 83.23 |
| CDY50460 | Canola | nucleus | 83.44 | 82.91 |
| CDX77493 | Canola | cytosol | 81.85 | 81.59 |
| Bra014967.1-P | Field mustard | cytosol | 81.85 | 81.59 |
| CDX85117 | Canola | nucleus | 80.89 | 80.63 |
| CDX95401 | Canola | cytosol | 24.84 | 68.42 |
| VIT_08s0007g03890.t01 | Wine grape | nucleus | 68.47 | 68.25 |
| KRH32652 | Soybean | nucleus | 68.15 | 68.15 |
| PGSC0003DMT400072406 | Potato | cytosol | 68.47 | 67.82 |
| KRH20030 | Soybean | nucleus | 67.52 | 67.52 |
| Os01t0513800-01 | Rice | nucleus | 62.74 | 63.55 |
| Solyc10g083600.1.1 | Tomato | nucleus | 68.15 | 63.5 |
| EES19780 | Sorghum | mitochondrion | 62.42 | 63.23 |
| Zm00001d018141_P001 | Maize | mitochondrion | 61.78 | 62.78 |
| Zm00001d038646_P002 | Maize | mitochondrion | 61.47 | 62.46 |
| TraesCS5B01G208800.1 | Wheat | mitochondrion | 59.87 | 60.45 |
| TraesCS5D01G217000.1 | Wheat | mitochondrion | 60.19 | 60.38 |
| Os05t0506900-01 | Rice | nucleus | 21.34 | 60.36 |
| HORVU5Hr1G061870.1 | Barley | nucleus | 60.19 | 60.19 |
| TraesCS5A01G215000.1 | Wheat | nucleus | 59.87 | 60.06 |
| TraesCS5D01G426000.1 | Wheat | mitochondrion | 59.55 | 59.37 |
| GSMUA_Achr11P... | Banana | mitochondrion | 63.69 | 59.17 |
| CDY33857 | Canola | cytosol, mitochondrion, nucleus | 21.34 | 54.92 |
| GSMUA_Achr5P20210_001 | Banana | nucleus | 63.69 | 51.68 |
| TraesCS2D01G079000.1 | Wheat | nucleus | 9.87 | 46.97 |
| TraesCS2A01G080900.1 | Wheat | nucleus | 9.24 | 43.94 |
| TraesCS2D01G059200.1 | Wheat | cytosol | 8.6 | 40.91 |
| HORVU2Hr1G013300.6 | Barley | cytosol | 12.42 | 32.77 |
Protein Annotations
| MapMan:17.1.2.2.1.11.1 | EntrezGene:821942 | UniProt:A0A178VDC5 | ProteinID:AEE76787.1 | ArrayExpress:AT3G23620 | EnsemblPlantsGene:AT3G23620 |
| RefSeq:AT3G23620 | TAIR:AT3G23620 | RefSeq:AT3G23620-TAIR-G | EnsemblPlants:AT3G23620.1 | TAIR:AT3G23620.1 | EMBL:AY070410 |
| EMBL:AY086550 | EMBL:AY122939 | Unigene:At.28364 | ProteinID:BAB02781.1 | InterPro:Brix | GO:GO:0000027 |
| GO:GO:0000463 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0019843 | InterPro:IPR007109 | RefSeq:NP_566734.1 |
| ProteinID:OAP04219.1 | PFAM:PF04427 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PFscan:PS50833 | PANTHER:PTHR12728 | UniProt:Q9LUG5 |
| SMART:SM00879 | UniParc:UPI0000001797 | SEG:seg | : | : | : |
Description
Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
Coordinates
chr3:+:8480025..8482222
Molecular Weight (calculated)
35729.7 Da
IEP (calculated)
10.402
GRAVY (calculated)
-0.622
Length
314 amino acids
Sequence
(BLAST)
(BLAST)
001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.