CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 23041469
nucleus: 27291164
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20030	Soybean	nucleus	96.82	96.82
VIT_08s0007g03890.t01	Wine grape	nucleus	78.66	78.41
PGSC0003DMT400072406	Potato	cytosol	74.52	73.82
CDX85117	Canola	nucleus	72.61	72.38
Bra014967.1-P	Field mustard	cytosol	72.29	72.06
CDX77493	Canola	cytosol	72.29	72.06
CDY18105	Canola	nucleus	70.06	69.62
Bra028325.1-P	Field mustard	nucleus	70.06	69.62
Solyc10g083600.1.1	Tomato	nucleus	74.52	69.44
CDY50460	Canola	nucleus	69.75	69.3
EES19780	Sorghum	mitochondrion	67.52	68.39
Zm00001d018141_P001	Maize	mitochondrion	67.2	68.28
AT3G23620.1	Thale cress	cytosol	68.15	68.15
Zm00001d038646_P002	Maize	mitochondrion	66.88	67.96
Os01t0513800-01	Rice	nucleus	66.56	67.42
GSMUA_Achr11P...	Banana	mitochondrion	71.66	66.57
TraesCS5B01G208800.1	Wheat	mitochondrion	64.01	64.63
TraesCS5A01G215000.1	Wheat	nucleus	64.01	64.22
HORVU5Hr1G061870.1	Barley	nucleus	64.01	64.01
TraesCS5D01G217000.1	Wheat	mitochondrion	63.69	63.9
TraesCS5D01G426000.1	Wheat	mitochondrion	64.01	63.81
CDX95401	Canola	cytosol	22.29	61.4
Os05t0506900-01	Rice	nucleus	21.66	61.26
GSMUA_Achr5P20210_001	Banana	nucleus	71.66	58.14
CDY33857	Canola	cytosol, mitochondrion, nucleus	19.11	49.18
TraesCS2D01G079000.1	Wheat	nucleus	8.6	40.91
TraesCS2A01G080900.1	Wheat	nucleus	7.96	37.88
TraesCS2D01G059200.1	Wheat	cytosol	7.01	33.33
HORVU2Hr1G013300.6	Barley	cytosol	10.83	28.57

Protein Annotations

EntrezGene:100781114	MapMan:17.1.2.2.1.11.1	EMBL:ACUP02006146	InterPro:Brix	EnsemblPlantsGene:GLYMA_10G066200	GO:GO:0000027
GO:GO:0000463	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0019843	UniProt:I1L977	InterPro:IPR007109
EnsemblPlants:KRH32652	ProteinID:KRH32652	ProteinID:KRH32652.1	PFAM:PF04427	PFscan:PS50833	PANTHER:PTHR12728
SMART:SM00879	UniParc:UPI0000E6489E	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:6403969..6406785

Molecular Weight (calculated)

35671.2 Da

IEP (calculated)

10.294

GRAVY (calculated)

-0.714

Length

314 amino acids

Sequence
(BLAST)

001: MLEIKTAKTR KGKRELEKRA PKLVESGKKT LILHGTKTSG VLNAVLAQIY HLKKDCAVKY SRRNENVKPF EAGGETSLEF FSLKTDCSIF VYGSHSKKRP
101: DNLVIGRTYD HHIYDLVEVG VENFKPMESF SYDKKLAPKE GSKPFIVFIG EGFEAVEELK HLKEVLLDLL RGEVVENLNL AGVDRAYVCA ALSPNRVFFT
201: HCALRLKKSG TVVPRMELEE VGPSMDFVLR RHRPPNESLR KEALKTSREK PKKKEKNVKK DELQGKIGSI YIPDQKVGET PLPYKAKGVK RERRESKRKN
301: ESDGSASKRK KEDS

Best Arabidopsis Sequence Match ( AT3G23620.1 )
(BLAST)

001: MMEIRTPKTG KAKRVLESRA PKLVETGKKT LILHGTKTSA TLSSVMTELY RLKKGGAIRY SRRNENIRPF ESGGETSLEF FSQKTDCSIF VYGSHTKKRP
101: DNLVLGRMYD HQVYDLIEVG IENFKSLRAF SYDKKFAPHE GTKPFICFIG EGFENVSELK HLKEVLTDLF RGEVVDNLNL TGLDRAYVCS AISPTKVFLT
201: HCALKLKKSG SIVPRMELVE VGPSMDLVIR RNRLPNDSLM KEAMRTSKDK PKKKEKNVDQ DAVLGKTGKI YMPDQKLKEM KLFDKSKGSK RERKDAKLKH
301: KEETVAKKMK VSSE

Arabidopsis Description

Ribosome production factor 2 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q9LUG5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.